RNA id: TCONS_00064555


Basic Information

Item Value
RNA id TCONS_00064555
length 4353
RNA type mRNA
GC content 0.48
exon number 14
gene id XLOC_033252
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 57401178 ~ 57426097 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggaggaagaggaagaggaggtgGACGAGGAAGAGGAAGTGGAGGAGAAAGGGACGGAAGGGGTCGAGGTGATAGAAGTCACCAACACACTGGTGAAAGTACAAACAGCCTGTGGgaaagatggacagatggaaTAACTCAAAGTGCAAGAGGAAGAGATGGAAGAGGACAGAGGAAAGGGGAAAATAAGcaacatcatcagggaaatgCTGTCCACCGTCCTATAATAATGGGAGGTGCGACACATTTACCTTCACCTTACCAAGGGAAATTTGGGAGATCTCTTCCTGGGTTGATGCAATTAAACCTGACCCCATCTTCAATGCAACAACCCATGAATTCAAGACACGACCTTGAAGGCATGAGTCTCCAAAGAACAAGTGGAGGCATGAGTGATTTAAGAGCCAGTCCACAAGGTGAAGCACGAACAGAATCTCAAAGAGGTAGAGGTGGTCATTGGAGAGGAAGAGGGAGAGATGGCCCCCCTGAGGTACGCACACTTGGGTATAAAACACTTGAAGGTCTGCTTGAGAAAGAAGCATCCGAGGTGGCCATCACTCTTTCATCTAGCACTGGACTTAGGAATCTGCTTGAGGAAAAGGTGATGAGAAATGACTTGGTGCAGCTGGTCTGTCAGGTTCTCTGCAAGGCCTTCCAGTCTCGAATTGATCGTAATACAGTGATGCACTTGGCTCGTGTCGTCAAGGACTCTCAGTTTTTTCTTAGCATTCTGCCACATCATGTAACTGGAATGATGTCAGATTACATGCCAGCCCGAAGAGATCAGTATCCCCAGCATTTGAGCAACATCATCAGCCTTGTCTCTGATGTTCTCAACATGTTTCCACAAAGTTCTGTGCATTCCGTCTCCATGTTGGTGACTCTTTTGAAACCAACCATCAATCAATTGCGTGCCTCTGGTGTGGATGTTCTCGCCAATACTGATCAGGACTTGGAGAGGGTGCAAGGTTTGGTAAACCATCTCCAAGAGAAATCAAGGGAAGGCACCTTGCGCTCAGATAAATACTCATTCCTAACAGCTGATGAAGATGCCCCACCTGGGGAGGAAGACTTCAGGATGATGAGCATTTATCCCTCGTTTGAGGAGTTCCACCTTGATCAGAAGCCTTTCTTGAGGCCGAACATAATCTCTCAAAGTTTCCCTAATGCTCGGATTTATTTAGACACACACTTTCGACTTCTGCGTGAAGATTTTGTGAGGCCACTGCGGGAGGGTGTCAAGGAGCTTTTGAGGATACACCATACTGAGAAAACTAATGGAATACCAATGAAAAATAGGCAATTTGATGACATCAGGGTCTACTTTGACACCCGAGTGATTTTACCACTTTGCACATCAATGGGAATTGCCTACAAAGTGAAGTTTGACACAAGGCGCCTTCAGTTTGTCCGTTGGGAAAATTCCAAACGCCTGCTTTACGGATCCCTTGTCTGCCTCTCCATGGACAACTTCGAAACCTTCCTGTTTGCCACTGTAACCGATCGCGACCCAAAGCTACTGAGACAGGGAGAGGTGAATCTCTGTTTTTCTCCTGACAGCAGAGCCGCTCTGGCCAGGGTTCAGCCCTCAGACTCATTCCTGATGGTCGAGACAACGGCTTATTTTGAGGCCTACCGATATGTCCTAGAGGGTCTCCAGGAGCAAGATGAGAATGATGTTCCCTTTCAAAGGTACATTGTGGAATGCAAAACAGATGTAGATCCTCCAGCTTATCTCCTGGTGGAAGGAAGGTCATATGATCTGTCATGCATCGCAGCAGAAGGGCAGGGGAAGATTCCACCCTTCAATCCTTTGACCCAAAATGCCTGGCCTGATGAGGAAAAAATGGGTCTCGATGAAAGCCAACTTCAAGCACTTAAACTGGCCTTAACCAAAGAGTTGGCCATTATACAAGGACCACCAGGAACAGGCAAGACGCATGTAGGACTGAAGATAGCTCAGGCTTTGCTAAAGAACCACGAGGCCTGGTCAAATGGTTGCCCTATGCTGGTGGTCTGCTATACCAATCATGCTCTTGACCAGTTTCTGGAAGGTATCCATGGCTTCCTAAAAGATGGGATTGTGAGAGTTGGAGGACGAAGTAACAGTGAAACTCTGAAGCGTTTCGGTCTAAGAGAGTTGACCAGGTTCAAAGACTTCCGCAAAAATTTGCCGCAGCACCTGAGAAGAGCTCATCATGAAATCAGCAATAATATGCAGGAAGCAGAAACTCTTTTAAAGGCGCAGTCGGCTCAGCTTGAGTGCAGCTTGCGAGGCGTCCTCAAAGAAGACTTCTTGGAAAAGTACATCTCTGAACAGCACTGGCACAGTCTGTGTCTACAGCCTGGGCCACAACAAACAGATGGAGAAGTGGCGGAAGATGAAGACGGAGCTCAGCTGGAGGAAGAGGAGCTGATAGATATCGATGAAGAGGCAGATCTGATCCAGGCAGAGAGGATAGTGGTGGACGCTGAACACGGAGATAAAGACAAGTATAAGCTGAAAGTAGAAGAGAAGAACATCGCTGCCATGGCGGAGCTGATGCTGGCTTTAAACCTGAATGATGCTGAAGCACAGCCGGGCCAGAACCAGACACAGACTCACGGTCATGCTCAGGCTGATGAACAGGAATGGCAGATGCAAGGCCACCAGAAGAAAAAACTCCGGCAAATGGCTCGAAAAGAGCTAAAGAAAACTTCAGCCATGACTCTTGCTTCTGAACAAGTGTATCAGGAGGCGGCGGAGCGTCTGAATGAAATCCGCCGTCATGAGGACCTGTCTGTGCTGCGGCAGGCGCGGGTTGTGGGAATGACCACCACTGGAGCTGCTAAATACAGGCAGGCTCTTCAGCAGCTGCAGCCCAGGCTGGTGATTGTGGAGGAGGCAGCAGAAGTGCTGGAGGCGCACACCATTACCACACTCAGCAAAGCCTGCCAGCATCTTATACTGATCGGAGACCACCAGCAGCTGAGGCCTAGTGCAACAGTGTATGAACTTGCCAAGAATTTCAGTCTGGAAGTGTCCATGTTTGAGAGACTTGTCAGAGTGAACTTCCCATTCGTGCGCCTCAACTACCAGCATCGCATGAGGCCAAGTATCGCTCGCCTGTTGACTCCTCATATATACTCATCTCTGGAAAACCATCCCTCTGTGCTGAAGTATGACAATGTCAAGGGAGTTCTTACAAATCTCTTTTTCGTGGATCACATTCAACCTGAAGAAGAGATTAAAGATGGACGGAGCCACCAGAACCCACACGAAGCTCGTTTTGTGGTCGAGCTTTGTCAGTATTTGCTGTTCCAGGACTATAAGCCTTCCCAGATTACCATTCTGACTACATACACCGGACAGCTTCACTGTCTGCGTAAGCTCATGCCCTCTCCAAAGTTCTCTGGCGTCAAGGTCCATGTTGTTGACAAGTATCAAGGAGAGGAGAACGATATTATTATATTGTCCCTAGTGCGCAGCAATCCTCAAAGGAGGGTGGGCTTCCTGAACATACCCAACCGTGTCTGCGTTGCGCTTTCTCGAGCTAAAATGGGTCTGTATTGTATTGGAAATATGGACATGCTCAGCTCGGTTACACTATGGAGCAACATCATTCACACTCTGAGAGAGCATGATCAAGTGGGACCAGCTTTGACACTGAGCTGTCAGAACCATCCAGATAAACAGATCCACGCATCTTGCGGTAATGACTTCAAAGGTGCCCCTGAAGGTGGTTGCGATCAACCCTGTCAGTATCGTCTGGACTGTGGCCACGTGTGCACCCGTATGTGCCACCCATATGATGCCGAACACAAGGAATACAAGTGCATGAAGGACTGCTCAAAGGTGCTGTGCGAACTGGGCCACAAATGCACACGTCGCTGTCACCAAGAATGCGGCAAATGCATGGTATCTGTAGATAAGATAATACCATCATGCCAGCACAATCAGAAGGTGCCTTGCCACAAAGATCCTGCAGAATTCGTGTGTCAAGTACGATGCGAAAAGACTCTTCCATGTGGGCATCCTTGCAAGGCGACCTGTGGAGAGTCCTGCACCTCTCAGTGCATGGTGAGAGTTCCGATAGAGCTGAAATGTGGACACATGCAAGAAGAACCATGCTTTGTTTCTAGGGATCACAAAAATGAGCCAAGATGTAACACCAAATGTGGTACTGTCTTAAAATGTGGCCATTCTTGTCCAGGAACGTGCAATGGATGCCATCAAGGTCGTCTTCATAAAGCATGCACCCACAAATGCCAGCAAATCCTAGTGTGTTCCCATGAGTGTCGGGAGCCTTGCGGAACCCTGTGCATGGCAGTGTCCTCATCACAGCTGCACCAAACTGTGTCACGAACCATGTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0031048 heterochromatin assembly by small RNA biological_process
GO:0031380 nuclear RNA-directed RNA polymerase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110804-2 Predicted to enable RNA binding activity. Predicted to be involved in heterochromatin assembly by small RNA. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of nuclear RNA-directed RNA polymerase complex. Orthologous to human ZNFX1 (zinc finger NFX1-type containing 1).

Ensembl:

ensembl_id ENSDART00000171531

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064765 lncRNA downstream 279463 57108325 ~ 57122910 (-) True XLOC_033250
TCONS_00065257 lncRNA downstream 294185 56954940 ~ 57108188 (-) True XLOC_033249
TCONS_00064764 lncRNA downstream 783816 56508611 ~ 56618557 (-) True XLOC_033245
TCONS_00064763 lncRNA downstream 859607 56508611 ~ 56542766 (-) False XLOC_033245
TCONS_00065256 lncRNA downstream 1012913 56387454 ~ 56389460 (-) True XLOC_033246
TCONS_00065258 lncRNA upstream 194808 57620905 ~ 57621869 (-) True XLOC_033256
TCONS_00064560 lncRNA upstream 204317 57630414 ~ 57631164 (-) True XLOC_033257
TCONS_00065259 lncRNA upstream 271038 57697135 ~ 57722862 (-) True XLOC_033258
TCONS_00065260 lncRNA upstream 361623 57787720 ~ 57790025 (-) True XLOC_033260
TCONS_00065261 lncRNA upstream 655538 58081635 ~ 58082635 (-) True XLOC_033262
TCONS_00064552 mRNA downstream 525007 56638688 ~ 56877366 (-) True XLOC_033248
TCONS_00064549 mRNA downstream 1290544 56097971 ~ 56111829 (-) False XLOC_033244
TCONS_00064550 mRNA downstream 1298655 56100756 ~ 56103718 (-) True XLOC_033244
TCONS_00064547 mRNA downstream 1405023 55909795 ~ 55997350 (-) False XLOC_033241
TCONS_00064556 mRNA upstream 10217 57436314 ~ 57476465 (-) True XLOC_033253
TCONS_00064557 mRNA upstream 52240 57478337 ~ 57485411 (-) True XLOC_033254
TCONS_00064558 mRNA upstream 65697 57491794 ~ 57539141 (-) False XLOC_033255
TCONS_00064561 mRNA upstream 208263 57634360 ~ 57655299 (-) False XLOC_033258
TCONS_00064562 mRNA upstream 208639 57634736 ~ 57635577 (-) False XLOC_033258
TCONS_00064553 other downstream 138728 57263510 ~ 57263645 (-) True XLOC_033251
TCONS_00064551 other downstream 863248 56539009 ~ 56539125 (-) True XLOC_033247
TCONS_00064544 other downstream 1752122 55650119 ~ 55650251 (-) True XLOC_033238
TCONS_00064543 other downstream 1846977 55555262 ~ 55555396 (-) True XLOC_033237
TCONS_00064542 other downstream 1855103 55547135 ~ 55547270 (-) True XLOC_033236
TCONS_00064559 other upstream 87737 57513834 ~ 57519523 (-) True XLOC_033255
TCONS_00064565 other upstream 343445 57769542 ~ 57769658 (-) True XLOC_033259
TCONS_00064577 other upstream 1710574 59136671 ~ 59136787 (-) True XLOC_033272
TCONS_00064585 other upstream 2259048 59685145 ~ 59685261 (-) True XLOC_033280

Expression Profile

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