RNA id: TCONS_00064557


Basic Information

Item Value
RNA id TCONS_00064557
length 963
RNA type mRNA
GC content 0.55
exon number 7
gene id XLOC_033254
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 57478337 ~ 57485411 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTGCCTCCATTAAAGGACTCAGCGGTGGTTCGCGGGTCAATTTTTAAAACTTGTTTGGCAGAATCCGATATTAATCGGAGTCATCCGAACAGCAAACATGACGGTCGGCAAGAGTAGTAAGATGCTGCAGCACATCGACTATCGCATGCGCTGTATCCTGCAGGACGGACGCATCTTCATCGGCACATTCAAAGCCTTCGACAAACACATGAACCTGATCCTGTGTGACTGCGACGAGTTCAGGAAGATCAAACCCAAGAACTCTAAGCAGCCGGAGCGTGAGGAGAAGAGGGTTTTAGGTCTGGTTCTGCTCAGAGGAGAGAATCTGGTGTCCATGACTGTAGAAGGACCTCCTCCTAAAGACACTGGCATTGCCCGTGTGCCGCTGGCAGGAGTGGCTGGAGGTCCAGGAGTGGGCAGAGCTGCGGGTCGAGGTGTTCCCGCTGGAGCTCCAATGGCTCAGGCTCCCGCTGGACTCGCCGGGCCTGTCAGAGGAGTCGGCGGACCCTCACAGCAGGTCATGACTCCTCAGGGTCGGGGTACGGTTGCTGCTGCCGCTGCGGGTGCCAGTATCGCTGGAGCCCCCACACAGTATCCTCCTGGCAGAGGCGGACCACCGCCACCCATGGGTAGAGGAGCGCCACCTCCAGGTATGATGGGTCCTCCTCCGGGCATGAGGCCACCAATGGGACCTCCAATGGGGATGCCACCTGGCCGCGGGGCACCAATGGGAATGCCTCCTCCTGGCATGAGGCCACCACCGCCTGGAATGAGAGGTCCTCCTCCACCAGGCTTGCGTCCTCCTCCCAGACCTTAAACCTCCACCCTGGACAAAGATGTACGTCTTTTCCGTGTATAGGAGACTCTGGCTGCAAGTTCTTGTATAGATTGTTGGTTTTTGTATTTTGTCAATTATTtcccttttttttaataaagtgtcAAATTGACATTCTTGTTTTAA

Function

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0046540 U4/U6 x U5 tri-snRNP complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005682 U5 snRNP cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0005686 U2 snRNP cellular_component
GO:0005687 U4 snRNP cellular_component
GO:0071004 U2-type prespliceosome cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko05322 Systemic lupus erythematosus
ko03041 Spliceosome
ko03032 DNA replication proteins

ZFIN:

id description
ZDB-GENE-040426-1819 Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus and viral nucleocapsid. Predicted to be part of spliceosomal complex and spliceosomal snRNP complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in cerebrocostomandibular syndrome and mixed connective tissue disease. Orthologous to several human genes including SNRPB (small nuclear ribonucleoprotein polypeptides B and B1).

Ensembl:

ensembl_id ENSDART00000011663

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064765 lncRNA downstream 355427 57108325 ~ 57122910 (-) True XLOC_033250
TCONS_00065257 lncRNA downstream 370149 56954940 ~ 57108188 (-) True XLOC_033249
TCONS_00064764 lncRNA downstream 859780 56508611 ~ 56618557 (-) True XLOC_033245
TCONS_00064763 lncRNA downstream 935571 56508611 ~ 56542766 (-) False XLOC_033245
TCONS_00065256 lncRNA downstream 1088877 56387454 ~ 56389460 (-) True XLOC_033246
TCONS_00065258 lncRNA upstream 135494 57620905 ~ 57621869 (-) True XLOC_033256
TCONS_00064560 lncRNA upstream 145003 57630414 ~ 57631164 (-) True XLOC_033257
TCONS_00065259 lncRNA upstream 211724 57697135 ~ 57722862 (-) True XLOC_033258
TCONS_00065260 lncRNA upstream 302309 57787720 ~ 57790025 (-) True XLOC_033260
TCONS_00065261 lncRNA upstream 596224 58081635 ~ 58082635 (-) True XLOC_033262
TCONS_00064556 mRNA downstream 1872 57436314 ~ 57476465 (-) True XLOC_033253
TCONS_00064555 mRNA downstream 52240 57402373 ~ 57426097 (-) True XLOC_033252
TCONS_00064554 mRNA downstream 69761 57401178 ~ 57408576 (-) False XLOC_033252
TCONS_00064552 mRNA downstream 600971 56638688 ~ 56877366 (-) True XLOC_033248
TCONS_00064549 mRNA downstream 1366508 56097971 ~ 56111829 (-) False XLOC_033244
TCONS_00064558 mRNA upstream 6383 57491794 ~ 57539141 (-) False XLOC_033255
TCONS_00064561 mRNA upstream 148949 57634360 ~ 57655299 (-) False XLOC_033258
TCONS_00064562 mRNA upstream 149325 57634736 ~ 57635577 (-) False XLOC_033258
TCONS_00064563 mRNA upstream 166092 57651503 ~ 57655030 (-) False XLOC_033258
TCONS_00064564 mRNA upstream 166095 57651506 ~ 57722816 (-) False XLOC_033258
TCONS_00064553 other downstream 214692 57263510 ~ 57263645 (-) True XLOC_033251
TCONS_00064551 other downstream 939212 56539009 ~ 56539125 (-) True XLOC_033247
TCONS_00064544 other downstream 1828086 55650119 ~ 55650251 (-) True XLOC_033238
TCONS_00064543 other downstream 1922941 55555262 ~ 55555396 (-) True XLOC_033237
TCONS_00064542 other downstream 1931067 55547135 ~ 55547270 (-) True XLOC_033236
TCONS_00064559 other upstream 28423 57513834 ~ 57519523 (-) True XLOC_033255
TCONS_00064565 other upstream 284131 57769542 ~ 57769658 (-) True XLOC_033259
TCONS_00064577 other upstream 1651260 59136671 ~ 59136787 (-) True XLOC_033272
TCONS_00064585 other upstream 2199734 59685145 ~ 59685261 (-) True XLOC_033280

Expression Profile

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