RNA id: TCONS_00064559


Basic Information

Item Value
RNA id TCONS_00064559
length 585
RNA type processed_transcript
GC content 0.56
exon number 5
gene id XLOC_033255
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 57491794 ~ 57539141 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGACCACCGCCTGCTTCACCACATAAACATACTTCCTCCACAGCATCCTCTACTGGCTCGACTCCCACTCACGGCAGCAGCGCTCCCAGTCCAGAGATGTCTCcacgagtgtgtgtgaatggagaaACCGAGAGTCAAGGGTCAAGCTCGGGCTCAGGCTCAAATCAGGCACCCAGAGCCAGTCCAACACCACCCAGAGCTCCAGCCATCACCAACGGCCCTCTTCCTCCAGGGGTGCACACACAACGGTGCTCCAAGTTGGCGGCTGTCTGCGTGCACCCCAACAGAAACTCACCCCCAGAATTCCAAAATGCACGGCGTTGCGTCAGCGTTGCAACATGCAGAGCggagcttctggtgtgcgacctgcagCTGGGAGCAGAGAGCGGATCAGAACGGACGCGTTTACTATGTTGATCACATCGAGAAAAGAACCACATGGGAAAGACCTGAACCTCTGCCACCAGGTTGGGAGCGACGTTTAGACCCAATGGGCCGTGTGTATTATGTGGATCATATAAACAGAACCACCACATGGCAGAGACCCACGCTAGAGTCGGTGCGCAACTATGAGGAATGGCAG

Function

GO:

id name namespace
GO:0045732 positive regulation of protein catabolic process biological_process
GO:0035519 protein K29-linked ubiquitination biological_process
GO:0070534 protein K63-linked ubiquitination biological_process
GO:0016567 protein ubiquitination biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120919-4 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in positive regulation of protein catabolic process; proteasome-mediated ubiquitin-dependent protein catabolic process; and protein polyubiquitination. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be active in cytoplasm. Is expressed in posterior lateral line primordium. Orthologous to human ITCH (itchy E3 ubiquitin protein ligase).

Ensembl:

ensembl_id ENSDART00000153981

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064765 lncRNA downstream 390924 57108325 ~ 57122910 (-) True XLOC_033250
TCONS_00065257 lncRNA downstream 405646 56954940 ~ 57108188 (-) True XLOC_033249
TCONS_00064764 lncRNA downstream 895277 56508611 ~ 56618557 (-) True XLOC_033245
TCONS_00064763 lncRNA downstream 971068 56508611 ~ 56542766 (-) False XLOC_033245
TCONS_00065256 lncRNA downstream 1124374 56387454 ~ 56389460 (-) True XLOC_033246
TCONS_00065258 lncRNA upstream 101382 57620905 ~ 57621869 (-) True XLOC_033256
TCONS_00064560 lncRNA upstream 110891 57630414 ~ 57631164 (-) True XLOC_033257
TCONS_00065259 lncRNA upstream 177612 57697135 ~ 57722862 (-) True XLOC_033258
TCONS_00065260 lncRNA upstream 268197 57787720 ~ 57790025 (-) True XLOC_033260
TCONS_00065261 lncRNA upstream 562112 58081635 ~ 58082635 (-) True XLOC_033262
TCONS_00064557 mRNA downstream 28423 57478337 ~ 57485411 (-) True XLOC_033254
TCONS_00064556 mRNA downstream 37369 57436314 ~ 57476465 (-) True XLOC_033253
TCONS_00064555 mRNA downstream 87737 57402373 ~ 57426097 (-) True XLOC_033252
TCONS_00064554 mRNA downstream 105258 57401178 ~ 57408576 (-) False XLOC_033252
TCONS_00064552 mRNA downstream 636468 56638688 ~ 56877366 (-) True XLOC_033248
TCONS_00064561 mRNA upstream 114837 57634360 ~ 57655299 (-) False XLOC_033258
TCONS_00064562 mRNA upstream 115213 57634736 ~ 57635577 (-) False XLOC_033258
TCONS_00064563 mRNA upstream 131980 57651503 ~ 57655030 (-) False XLOC_033258
TCONS_00064564 mRNA upstream 131983 57651506 ~ 57722816 (-) False XLOC_033258
TCONS_00064566 mRNA upstream 380714 57900237 ~ 57938043 (-) False XLOC_033261
TCONS_00064553 other downstream 250189 57263510 ~ 57263645 (-) True XLOC_033251
TCONS_00064551 other downstream 974709 56539009 ~ 56539125 (-) True XLOC_033247
TCONS_00064544 other downstream 1863583 55650119 ~ 55650251 (-) True XLOC_033238
TCONS_00064543 other downstream 1958438 55555262 ~ 55555396 (-) True XLOC_033237
TCONS_00064542 other downstream 1966564 55547135 ~ 55547270 (-) True XLOC_033236
TCONS_00064565 other upstream 250019 57769542 ~ 57769658 (-) True XLOC_033259
TCONS_00064577 other upstream 1617148 59136671 ~ 59136787 (-) True XLOC_033272
TCONS_00064585 other upstream 2165622 59685145 ~ 59685261 (-) True XLOC_033280

Expression Profile

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