RNA id: TCONS_00065258


Basic Information

Item Value
RNA id TCONS_00065258
length 754
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id XLOC_033256
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 57620905 ~ 57621869 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttatatttaaatcTATATAATCTGTATAATTATATTTCAGTCTTTTCACAATTAAACACAAGGCATTTTCAATCATTGCAGTTTCTGAGTATAATTCAgtgagaaaatgaatgatttgtgtGAACTAGTCCtctaaaacagtGTTTACAGAGAAATGACAGGACTGTACATCTCCATCAAAAGTCTATTCTATCCACAAACTGCTCTTGAGAAATAACCTGGCTGACACTATAAAACATCTCCTAAACGCATGCAGTTTCATGTTCCGGTATCCAGAGGAGTAAAGATGACCTTAAAGGTGTTGCAGATCTTTTTTGCTTTAATTATGGTCTTGTTTTTCTTCTTGATCGACTGAATCTGCTTCAAAGCTACCGGCTTGACAAGCTTCATCACAGAATGCAGCaaattatgcagtttattttatatacatgcgAGGAATTGTACAGACATGCCTGTAGTGTCGAGGATGAACACAATTCAGAACTGAAGAGTCGATTCAATCTGAAGTCAACTGGTAATCGAGGAAATTACAATCTCAAACAAATTCAATACAAGCACTGAGGAATTTCATTAGTTTCACACACTAAGCTCCAAAACATACACATATCTTTGACTAATTATGCCTATTTATTCCCTGATCCattttttatttacctatttatttacaCAACATTAAACTTTTGAAACAAGCCatcaaaactattaaaaattaaatatttaatcaatGTGCATTAGAACTAACTTAACATAATt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064765 lncRNA downstream 497995 57108325 ~ 57122910 (-) True XLOC_033250
TCONS_00065257 lncRNA downstream 512717 56954940 ~ 57108188 (-) True XLOC_033249
TCONS_00064764 lncRNA downstream 1002348 56508611 ~ 56618557 (-) True XLOC_033245
TCONS_00065255 lncRNA downstream 1052993 56330271 ~ 56567912 (-) False XLOC_033245
TCONS_00064560 lncRNA upstream 8545 57630414 ~ 57631164 (-) True XLOC_033257
TCONS_00065259 lncRNA upstream 75266 57697135 ~ 57722862 (-) True XLOC_033258
TCONS_00065260 lncRNA upstream 165851 57787720 ~ 57790025 (-) True XLOC_033260
TCONS_00065261 lncRNA upstream 459766 58081635 ~ 58082635 (-) True XLOC_033262
TCONS_00065262 lncRNA upstream 1048836 58670705 ~ 58672580 (-) True XLOC_033263
TCONS_00064558 mRNA downstream 81764 57491794 ~ 57539141 (-) False XLOC_033255
TCONS_00064557 mRNA downstream 135494 57478337 ~ 57485411 (-) True XLOC_033254
TCONS_00064556 mRNA downstream 144440 57436314 ~ 57476465 (-) True XLOC_033253
TCONS_00064555 mRNA downstream 194808 57402373 ~ 57426097 (-) True XLOC_033252
TCONS_00064554 mRNA downstream 212329 57401178 ~ 57408576 (-) False XLOC_033252
TCONS_00064561 mRNA upstream 12491 57634360 ~ 57655299 (-) False XLOC_033258
TCONS_00064562 mRNA upstream 12867 57634736 ~ 57635577 (-) False XLOC_033258
TCONS_00064563 mRNA upstream 29634 57651503 ~ 57655030 (-) False XLOC_033258
TCONS_00064564 mRNA upstream 29637 57651506 ~ 57722816 (-) False XLOC_033258
TCONS_00064566 mRNA upstream 278368 57900237 ~ 57938043 (-) False XLOC_033261
TCONS_00064559 other downstream 101382 57513834 ~ 57519523 (-) True XLOC_033255
TCONS_00064553 other downstream 357260 57263510 ~ 57263645 (-) True XLOC_033251
TCONS_00064551 other downstream 1081780 56539009 ~ 56539125 (-) True XLOC_033247
TCONS_00064544 other downstream 1970654 55650119 ~ 55650251 (-) True XLOC_033238
TCONS_00064543 other downstream 2065509 55555262 ~ 55555396 (-) True XLOC_033237
TCONS_00064565 other upstream 147673 57769542 ~ 57769658 (-) True XLOC_033259
TCONS_00064577 other upstream 1514802 59136671 ~ 59136787 (-) True XLOC_033272
TCONS_00064585 other upstream 2063276 59685145 ~ 59685261 (-) True XLOC_033280

Expression Profile

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