RNA id: TCONS_00064564


Basic Information

Item Value
RNA id TCONS_00064564
length 815
RNA type mRNA
GC content 0.49
exon number 4
gene id XLOC_033258
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 57634360 ~ 57722862 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCTACTGAAGAGCTACAAATCACGCGCGCGCTTTCTGCGAGGGTAAATATCAGAATGGTCGGGATTCCGGGCGCGTTCCAATACAGTGCAGAGAAGAAGGTTCCTGCCATGCCCGGTTCCCCAGTGGATGCAAAGACTCATTCCAGACCGACCGTCTCCGTCATGCCACCGCTGCCCTCCGTCAACCCCAGCGGACCTCGTCCCGCAGCCTTCTCCACTACTGCATTAACCAATGGGATCAATCATTCCCCGCCGATGCTCAACGCCATTCCCTCTCCTCCTCAGCGCTATAGCAACGGCCCTTCCTCATCATCCTCCTCTTCCCTGGCCAATCAGCAGCTTCCGGCCACATGCGGCGCTCGACAGCTCAGCAAACTCAAGCGCTTCCTTACCACACTGCAGCAGTTCGGCAATGACATCTCGCCTGAGATCGGAGAGAGCGTCCGCAACCTGGTGCTGGCGCTGGTGAACTCCACCGTCACCATTGAAGAGTTTCACTCCAGACTGCAGGAAGCCACAAACTTCCCACTGAGGCCCTTCGTCATACCGTTTCTGAAGGTAAATGACtagaaaactaaaactaaaccaaaacattGATTAAGTAATACCGAATTTGGTAATACTGGTATCCATGAAAgtgttttattagatttttttttatatttaacccTCAAAGACTCAAACACAGACAAAGATCTCCTTTTTTGACcttgtttttaattattgaaaatgttATATTGTAACAGCCCTGCAGgcacatgacgtcatattgatgttgtaccccaacatcgtgggggCGTTGgattttatttgc

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003714 transcription corepressor activity molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-070209-1 Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human CBFA2T2 (CBFA2/RUNX1 partner transcriptional co-repressor 2).

Ensembl:

ensembl_id ENSDART00000186163

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064560 lncRNA downstream 20342 57630414 ~ 57631164 (-) True XLOC_033257
TCONS_00065258 lncRNA downstream 29637 57620905 ~ 57621869 (-) True XLOC_033256
TCONS_00064765 lncRNA downstream 528596 57108325 ~ 57122910 (-) True XLOC_033250
TCONS_00065257 lncRNA downstream 543318 56954940 ~ 57108188 (-) True XLOC_033249
TCONS_00064764 lncRNA downstream 1032949 56508611 ~ 56618557 (-) True XLOC_033245
TCONS_00065260 lncRNA upstream 64904 57787720 ~ 57790025 (-) True XLOC_033260
TCONS_00065261 lncRNA upstream 358819 58081635 ~ 58082635 (-) True XLOC_033262
TCONS_00065262 lncRNA upstream 947889 58670705 ~ 58672580 (-) True XLOC_033263
TCONS_00065263 lncRNA upstream 1008482 58731298 ~ 58733557 (-) True XLOC_033264
TCONS_00064570 lncRNA upstream 1033710 58756526 ~ 58759100 (-) True XLOC_033265
TCONS_00064562 mRNA downstream 15929 57634736 ~ 57635577 (-) False XLOC_033258
TCONS_00064558 mRNA downstream 112365 57491794 ~ 57539141 (-) False XLOC_033255
TCONS_00064557 mRNA downstream 166095 57478337 ~ 57485411 (-) True XLOC_033254
TCONS_00064556 mRNA downstream 175041 57436314 ~ 57476465 (-) True XLOC_033253
TCONS_00064555 mRNA downstream 225409 57402373 ~ 57426097 (-) True XLOC_033252
TCONS_00064566 mRNA upstream 177421 57900237 ~ 57938043 (-) False XLOC_033261
TCONS_00064567 mRNA upstream 177436 57900252 ~ 58149165 (-) True XLOC_033261
TCONS_00064568 mRNA upstream 1014352 58737168 ~ 58764672 (-) False XLOC_033265
TCONS_00064569 mRNA upstream 1014353 58737169 ~ 58757131 (-) False XLOC_033265
TCONS_00064571 mRNA upstream 1049393 58772209 ~ 58828398 (-) False XLOC_033266
TCONS_00064559 other downstream 131983 57513834 ~ 57519523 (-) True XLOC_033255
TCONS_00064553 other downstream 387861 57263510 ~ 57263645 (-) True XLOC_033251
TCONS_00064551 other downstream 1112381 56539009 ~ 56539125 (-) True XLOC_033247
TCONS_00064544 other downstream 2001255 55650119 ~ 55650251 (-) True XLOC_033238
TCONS_00064543 other downstream 2096110 55555262 ~ 55555396 (-) True XLOC_033237
TCONS_00064565 other upstream 46726 57769542 ~ 57769658 (-) True XLOC_033259
TCONS_00064577 other upstream 1413855 59136671 ~ 59136787 (-) True XLOC_033272
TCONS_00064585 other upstream 1962329 59685145 ~ 59685261 (-) True XLOC_033280

Expression Profile

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