RNA id: TCONS_00065263


Basic Information

Item Value
RNA id TCONS_00065263
length 1997
lncRNA type antisense_over
GC content 0.30
exon number 2
gene id XLOC_033264
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 58731298 ~ 58733557 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGATCACGGCATGTTTTATTCAGGATCTTCAAGCACCATCAACACAAAAACTGAAGCAGACAATGAAACCACTGACCAAAACAAAACCACAGTGCAAGAGAAAACAGCATCACTGCATAATGCGCACAGAAAGAGCATGTGTCTGATTCCAAACAACCCACAGTGAGTCCTGAATGCATTCATGAACAACATGCACAACTGACGGACACGTGAGAAAGAAAAGAGCTAGCATCTGAAAGTCAAGTCAACAAGCAAAAACAAGAggattattagtaataataataataatatccacAGAATATTCTCTCACTGACCGTCATTCAGCGGTCGGTCACATGGCATAAGAGGATAAATCAGACTCCAgcgtctgaacactgtaaataAGCACAGAATCCTCCTTTTGATGACATTAATGTGGCTTTCATAAGAGTTCAATCCCAGAGGAAATGCAGGAATCTCCATGAAACACAGAACTGAGCTCAGTGATGCTGAAGAACACACACAGATCTGCTGCTTTACACAACGAAGACCGCAGTATAAACTGtgcaaatgaaaatgaaacacaCACGGGTCATTCTGTCAAACAGgtggatttaaaataaatgacactTAGAGAAGACAATGGCAGACTGCACCATCTAAAGCTAAacgaatatttattttaaaaacattaagggTTATATAAGAAGGGTTTTGAGGTCTCGACTGtacttttttgtaaatatttattgctattttagtCGAGACTTTTAAAAATCtgaagctttttaaaatgtccaaattctttaaaagtaaaataataacgTAAAGGATTTACAAAATAaggcaataaaaatattaaacaaaatattaaatactaaaatattagGTGTCACATTAtattgatggtccgtttgttgagtgtaagttacattgcatctacatgccaactaatgctcattagattataagtagactgttaggttggggttggggttagtgtgagttgacatgtacttgcaaagtttcctatagtcagttaaatgtgttgaaggagcagcatcagcagatattaagcagacagtctactaatactcaaatggaccattgtaataaagcagtaccaaatattaataaaaagtccAAAAATTCGTAAATTAGACCAAAGGATgtggacattttaaaataaaaaataaattaacttacTTAAACATTTGTATTTTCTGCTAGtttcaaataactaaataattactggaaataaataaataaagtaaaactaaaaaagaaaagaaaatgtagtcactttatttatttgcatttattattcaGTTATTAAATATTAGGCAATTAGGTAAATTAAATGAgtgctttttgtttgatttattggtttcatttaaaaacaactgtactttttttttttactattatttattatatatttaattcttaaatttatttttgcagttatttaaaaCTGGCGGAAACTACAGATGTTATTTGGCAACTAGGtcaattaaatgtatgttttttatttgtttaggtTTATTTACATTTCCACATCCTTTGGTCTCATTTAGAAATGACtgtccttttattattatttatgttgagGCTTTTTCCCtcattttattccttttttaaatgtccaaattctttacATTTTATTTCCTTTAGTTTACTTttcatcactttattttttatttgctgttgtTATTCAGTTATTTAACTGGCAGAAAATACAAAATGCTTATTGggcaattaaataaatgtttctttgtttttaaacagGTCCACGTTGAGAAAAGactcaatatatttatattattcaatataaatttaacatttattaaagtcataacattttaaagacaacaatgaaaataatttgGTTATGTTGTTCctcattttatcattatttttaattttataaaaagtaaaaaaatactaCTATTTCATGACCTATTTCAGTTAttttgaagataaaataaatgacaattaaacacattttccTTGCTAA

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0001707 mesoderm formation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001710 mesodermal cell fate commitment biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:1905770 regulation of mesodermal cell differentiation biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0007498 mesoderm development biological_process
GO:0007501 mesodermal cell fate specification biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0015849 organic acid transport biological_process
GO:0045165 cell fate commitment biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0046942 carboxylic acid transport biological_process
GO:0010470 regulation of gastrulation biological_process
GO:2000027 regulation of animal organ morphogenesis biological_process
GO:1905902 regulation of mesoderm formation biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0050793 regulation of developmental process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042661 regulation of mesodermal cell fate specification biological_process
GO:2000380 regulation of mesoderm development biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process

KEGG:

id description
ko03230 Viral genome structure
ko02010 ABC transporters
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065262 lncRNA downstream 58718 58670705 ~ 58672580 (-) True XLOC_033263
TCONS_00065261 lncRNA downstream 648663 58081635 ~ 58082635 (-) True XLOC_033262
TCONS_00065260 lncRNA downstream 941273 57787720 ~ 57790025 (-) True XLOC_033260
TCONS_00065259 lncRNA downstream 1008436 57697135 ~ 57722862 (-) True XLOC_033258
TCONS_00064560 lncRNA downstream 1100134 57630414 ~ 57631164 (-) True XLOC_033257
TCONS_00064570 lncRNA upstream 22969 58756526 ~ 58759100 (-) True XLOC_033265
TCONS_00065264 lncRNA upstream 314350 59047907 ~ 59050828 (-) True XLOC_033269
TCONS_00065265 lncRNA upstream 317429 59050986 ~ 59052350 (-) False XLOC_033270
TCONS_00065266 lncRNA upstream 317429 59050986 ~ 59053205 (-) False XLOC_033270
TCONS_00065267 lncRNA upstream 317843 59051400 ~ 59052639 (-) True XLOC_033270
TCONS_00064567 mRNA downstream 582133 57900252 ~ 58149165 (-) True XLOC_033261
TCONS_00064566 mRNA downstream 793255 57900237 ~ 57938043 (-) False XLOC_033261
TCONS_00064564 mRNA downstream 1008482 57651506 ~ 57722816 (-) False XLOC_033258
TCONS_00064563 mRNA downstream 1076268 57651503 ~ 57655030 (-) False XLOC_033258
TCONS_00064562 mRNA downstream 1095721 57634736 ~ 57635577 (-) False XLOC_033258
TCONS_00064568 mRNA upstream 3611 58737168 ~ 58764672 (-) False XLOC_033265
TCONS_00064569 mRNA upstream 3612 58737169 ~ 58757131 (-) False XLOC_033265
TCONS_00064571 mRNA upstream 38652 58772209 ~ 58828398 (-) False XLOC_033266
TCONS_00064572 mRNA upstream 56029 58789586 ~ 58828113 (-) True XLOC_033266
TCONS_00064573 mRNA upstream 138043 58871600 ~ 58910402 (-) False XLOC_033267
TCONS_00064565 other downstream 961640 57769542 ~ 57769658 (-) True XLOC_033259
TCONS_00064559 other downstream 1211775 57513834 ~ 57519523 (-) True XLOC_033255
TCONS_00064553 other downstream 1467653 57263510 ~ 57263645 (-) True XLOC_033251
TCONS_00064551 other downstream 2192173 56539009 ~ 56539125 (-) True XLOC_033247
TCONS_00064544 other downstream 3081047 55650119 ~ 55650251 (-) True XLOC_033238
TCONS_00064577 other upstream 403114 59136671 ~ 59136787 (-) True XLOC_033272
TCONS_00064585 other upstream 951588 59685145 ~ 59685261 (-) True XLOC_033280

Expression Profile

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