RNA id: TCONS_00064574


Basic Information

Item Value
RNA id TCONS_00064574
length 3867
RNA type mRNA
GC content 0.57
exon number 12
gene id XLOC_033267
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 58871600 ~ 58910402 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGACGGGGGGCAGTGAGAGTGTAGCAGGAGAAAAAGATGGAGGAACGACGCTCATCGCTCAGGTCCCGGTCGGCTGGCGGAGGAAGGTGGAGGACGGAGCTGTGTCTTACATCAGCCCGAGTGGTACAGTCCTTCAATCTGTGGATGAGGTGAGGGTGTATCTGCGCACAGACGGCACATGTAAGTGTGGTCTCGAGTGCCCGCTTGTCCCAAATAAGGTCTTTAATTTTGACCCTGCTGCAATGGTCCAAGCTCCTGGTCATCAGTCGGGTAAAGTAGAGGAAGACATGACCAAACTCTGCAACCATCGCAGGAAAGTAGACGCTATGACAGCGTTATGTCAAAGCATGCATCCCTCACATCTCGCACCACTGGCTCAAGCCACAGGAGGTGTTGTATGCTCAGTGGACGGCAGAGAGTCGAGAGGATCAATGCTAACACATGGAGACGGAGCCCACTGCACTTACCCTCAGCCCAGACACAGCCAGCCCAAACCCAACATGGGCTTTCCTCTGTCCTCCTCTCGCTCTGTTCTGCAGAACGGCTCTGTTAATCTCTCCCCGATTTCACGACCTCCAGATCAGGGTTCACCTCTAAAGAAGTCCCAGGCGCCTGTTTACGCAAAGCAGCAGTGGAGCCCTCACCCGCCGCTCATTCAGAACACCCCCCAAAGAACAGCACACAACCCAACATCTCCAAACAATGTAAAACCAACGCAAGCGCATCCTCCAGACTCCATAAACTCATTCTCATTTTCATCATCTTTAAGCAATCGAACTATTCCACCGATGTCCCAGGGGGCGAGTGTTAAGTCTCCGTCTCCTCTTTCGCCGTCTCGCACACGGGACTCATTCTCACCGCACCAGCGTTCTCGACACTCCTCCACATCTTCACTATCCGATCATCAAATCTTCATCCAGGGAGCCAAACCTCTGCATCCCACAATGCCTTGCTCTTCTCCCAAGCTTCCCAATGCACCCTTGAGTCCGTGTAGTCGCCTGGAGGGCATTCTGCAGCACTACAAAGATTGCAGTACGTCCTCAAGCATTAGCACCAGTGCTAACCAAAGCATCCATCAGGCGTCATTAGTGGCTCTTCCCAATGCAAGTGACAAAAGGAACGGAGCGATGCTCGGACAGATTCTCAATCAGAAGCAAAAGAGCCACATTAATAACTCTTTCCCTGCTAGCAGCCTTTTATCGGCGGCTGCTAAAGCAcagttggccaatcagaaaacaGAAGGGCTGTCCGCACTCCCGCTTGCAGGCCTGGACAAGGAGCAGCAGTCAAAGGTATTGATTAGCACTTTAAACAGTAGCGTCCACAACACTTCCTCCAGACCGCAAGCCCTGACCGCCCTCTTGCTCCCGCACTCCCCTGCTTCCCCCTCCGAGAAAAACTTGCGGCGCAAACGGCAGAGGCGGTCGCCCACCGTTTTGAGCATGCTGAAAGACACGCAGTTGGGTCGTACTGTTTTAGATCTATCCTCACCACCTCAGCTCATCCCTCCATGCTCTTCTCCTCCCGTACACAACAGCTCCGACAACCTCCGGCTGCCTGTCAATCCTCCGAATTGCAGATTGCAGGATTCGGAGGAATGCAAGAAGCCGGGGATTGCTAATTCGCTTCCTTCCGCATCTCCATCCCAACCCCTCTCCGCCCTGCTTCACCTTCTTAGCATGCAGAACGCAAATCAGCAGTGCATTGGTGCCAAGCCGGGTAACATGCACGCAAACACATCCCCCAGACCCATCACTCCACTGACGCCCCAAGGTGACGGGCAGTCTGTGTTACGCATACACAACCCACAACCCCAAAGCACAACCCCTACTCTAGACCCCCAGCAGCCGGCATCCCAAGCGTTTCCGATAATGGGTGACGAGACAACAGCAAACCTCAAAGCCGCCTCCAGCAACACCATCCTGAACCTGAGCCAGCCCCACGTGGGCACCACCACGCCAGACCTCAGCGGTTCAATTATATCCATGATCAACCAGATGTCCTCAAACTCCTGCTTGCCCACGTTTGCGGAGAAAGTTTGTGGGTCCAAAATGACCGAGGCTTATCCTGAGCACAGCACCTATCAGATTAACCAGCCAAACCACAGTCCAGATGTGGAAGATAAAGGTCCTGTAGAGACGATAGACTCAGACACACGATTGCTGGCTGGCTGTGAGCCCGACCACGGCCTCTCGTTATCCACTGCCCCAACTTCTGACCTTACCAACCCAGCCACAGACCCTGCTATCTCCCTCCCGCTGGCCGAGGCTTTTCCCTTCATGACCCAAGAACAGCTCCTCCAGCTTCTGTCCTCCAATGCTGGCCTGCCTTCCCTTCTGCCGCCCTTCCTAGGCTCCCTACCTCTCGGCCTCTGGACGGGCAGTCAACCCTCGACGCCAGGCAGCAATCAATCTCAGCATCCACCCATTGGGAACCAGGGATCTCCTCTTAACCTTCTCAACCAAGCCGAGCTCCCTCTTAATCTCCTGAGCCTGTTAAATCCTGCAGGATCGGCTGCAGCGCTGCCCCCGGTGGCAGGGGTGGAAACTGGAGAAAAGCCCCCAGGGCTTCAAGCTCTCCTAATGGCTTCTTTGCTTCTCGGACAGAATCCGGCAGCCATGTTGCCATTACCGGCGCTCAATCTGGAGCTTCCTACGCCGCCGCAGCAGGTGTTTGCGGACGGGGTGTCTTTGGAAAAGCCACCTGCTCTGCTGGACTCTGTGCTGATGGGGCCGGGGCTTCTGGAGGCTCTTCAGACTCTTGCCCCGGGTGCAGACGGCCAGTCGCTGCTGCTTTCTGCCCCTCTCGCTGCTCCTCCACCCGCATTCCTGTCCCTCAATCCCGCTCTGCTGGCCGCAGCTCTCGCACAGACCGAACCCCTACCCAACCACACGCCATCCCCCCCGCCGCATTCTCAGGGGACTCTGTCCAGCCCTGCTCTAGTTTCTACCTCGGTGTCCTGCGGCCCTCTGGTGTCGGCGGGGCCAGAAGTTTGTGACCCGCTGGCGGAGCAGGACAAGAACAGCCAGACGCATCACTTCCTATCGCCGCTGCTCGCCCCGGGGGTTCTGGgtgacCTGGCCGCTCTAGGGAACATCAACAGTCTTCATGGTTTACTGGGAGCAGGACCTCTTCTTCTGCCGCAGGGCGTCCCGCTGACACAGAACCAGACCACTCTCAACCCCCTCACCTGCCTGCAGCTGACGATGGCGCCGGCGCTCATGGGAGAAAAGCCCGTAGCGCTGCATGAAACTCCTCCGCCACAGGACGCCGCCGCTCCGCCTCATGATTCCCTGTCGCAGCAGAGAGAGGCGCCAGGGCTGTTCGATCCGTACGGATCCTTCATGGACACCATCTACACCTCCTTCCTGCAGGTGAGCGAACGCGGCTCCGACTCGAACCCGCTGACCTTCCCAGCTAGCGCTCCTCCGTCTCTGAGCCCACGCCGCGCCTGCTCCGTCCACAACCCTGACTTGTCCCGCCTAGGCCCGGATGTGGCTCAGTCTCCGGCCCGCGGGACGCCCAAACCCAGCGGAGACTCGCCGCCGCCGCCCTGCAGGCCAGCCGGAGCACACGCACTCACAGTAGAGGAGGCCAAAACACACACATCCAAACACTGTGTGTTCAGCAACGGCCTCCATGCAGGAGTGCAGGAGTATCTGAGTCCCACACAGAGGACGAGCAGAGACGAGGATGAAGATATCAGCCACGCGGAGCAAATCAGGGTCAGTGAGGGCTTCACACTAATGGGTTCAGATCTGCCCGGCGGCATCGACAGCATCATTGAGGAGCCTTCGGCCTCTGCAGTGAGGGaacacacacatttcacacaccttcagctgtatatgtacatgtgtttgtgttga

Function

GO:

id name namespace
GO:0002244 hematopoietic progenitor cell differentiation biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0010369 chromocenter cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041027-3 Predicted to enable chromatin binding activity. Acts upstream of or within definitive hemopoiesis and hematopoietic progenitor cell differentiation. Predicted to be active in chromocenter and nucleus. Human ortholog(s) of this gene implicated in autism spectrum disorder. Orthologous to human MBD6 (methyl-CpG binding domain protein 6).

Ensembl:

ensembl_id ENSDART00000122003

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064570 lncRNA downstream 112866 58756526 ~ 58759100 (-) True XLOC_033265
TCONS_00065263 lncRNA downstream 138409 58731298 ~ 58733557 (-) True XLOC_033264
TCONS_00065262 lncRNA downstream 199386 58670705 ~ 58672580 (-) True XLOC_033263
TCONS_00065261 lncRNA downstream 789331 58081635 ~ 58082635 (-) True XLOC_033262
TCONS_00065260 lncRNA downstream 1081941 57787720 ~ 57790025 (-) True XLOC_033260
TCONS_00065264 lncRNA upstream 146355 59047907 ~ 59050828 (-) True XLOC_033269
TCONS_00065265 lncRNA upstream 149434 59050986 ~ 59052350 (-) False XLOC_033270
TCONS_00065266 lncRNA upstream 149434 59050986 ~ 59053205 (-) False XLOC_033270
TCONS_00065267 lncRNA upstream 149848 59051400 ~ 59052639 (-) True XLOC_033270
TCONS_00065268 lncRNA upstream 165403 59066955 ~ 59068903 (-) True XLOC_033271
TCONS_00064571 mRNA downstream 43568 58772209 ~ 58828398 (-) False XLOC_033266
TCONS_00064572 mRNA downstream 43853 58789586 ~ 58828113 (-) True XLOC_033266
TCONS_00064568 mRNA downstream 107294 58737168 ~ 58764672 (-) False XLOC_033265
TCONS_00064569 mRNA downstream 114835 58737169 ~ 58757131 (-) False XLOC_033265
TCONS_00064567 mRNA downstream 722801 57900252 ~ 58149165 (-) True XLOC_033261
TCONS_00064575 mRNA upstream 19688 58921240 ~ 58975010 (-) False XLOC_033268
TCONS_00064576 mRNA upstream 19688 58921240 ~ 58975019 (-) True XLOC_033268
TCONS_00064578 mRNA upstream 353584 59255136 ~ 59271436 (-) False XLOC_033274
TCONS_00064579 mRNA upstream 361580 59263132 ~ 59271270 (-) True XLOC_033274
TCONS_00064580 mRNA upstream 448905 59350457 ~ 59357256 (-) True XLOC_033275
TCONS_00064565 other downstream 1102308 57769542 ~ 57769658 (-) True XLOC_033259
TCONS_00064559 other downstream 1352443 57513834 ~ 57519523 (-) True XLOC_033255
TCONS_00064553 other downstream 1608321 57263510 ~ 57263645 (-) True XLOC_033251
TCONS_00064551 other downstream 2332841 56539009 ~ 56539125 (-) True XLOC_033247
TCONS_00064544 other downstream 3221715 55650119 ~ 55650251 (-) True XLOC_033238
TCONS_00064577 other upstream 235119 59136671 ~ 59136787 (-) True XLOC_033272
TCONS_00064585 other upstream 783593 59685145 ~ 59685261 (-) True XLOC_033280

Expression Profile

//