RNA id: TCONS_00064575


Basic Information

Item Value
RNA id TCONS_00064575
length 3165
RNA type mRNA
GC content 0.54
exon number 22
gene id XLOC_033268
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 58921240 ~ 58975019 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCCGAGAGCAGATGACATCTAAAAACTACAGTTTCTCTGTACGGCTGCACGTGGTGTGACGCTCGGTTGCATCAGCGGCAATAGATGATCGCTTCAGACCGGTTCTGTTTGCTGTTGTCGGTATATACGGCGTGTCGGTCTGACTTTAGGAGCATAATCGCGGACGGTGAAATGAAGCTGTTTATCGGTGAGGGAAACCCGCACTGCCTGAAGGTGTTGGCGGCGCTGGAGCTCAGCGGAGTCCGGTGTGAAACTCAGCTGGTGAAACACGAGGAGAAAGTGGTCCCGTATCTCACACACCCCGTGTTGCCCATCCTGCAGTTACCCAGCGGTCAGCATCTCTTCAGCCCCAACAGCATCTGCCAATATCTGTTTGACATCAGTGGTCAGAAGGCGACAGACGCGACAAACCAGTGGCTGGAATGGGAGGCTACAAATTTACAGcctGCAGTGCTGCAGTCTCTCCAGCTGGTGGCGCTGCAGGGGAAGCGTGTAGAAGCCGCTGCTGTGATGAAGGAGCCTCTGAGCTGGCTGGAGCAGAGTCTGAGCAAGAGAAAGGCATCATTCCTTACTGACgaggtGGTGTCAGTGGCAGATGTGGTCCTCTGGGCGGCGCTGTATCCTCTGCTGTCAGACAGTGCATTTGAACCCGGTGATCTGCAGGCGGTGCGCGGCTGGTTTGAGCGAGTGTGTTCTGTCTCTGCGTGTCAGTCTGCAGCTCTCAGAGTCCTGCAGGGTAAAGGAGCCGAAGCCTTGAAGAGTTTTCTGCAGAAACAgcctgtcacacacacaccacgCAGAGACAGTCCCAGCAACAGCActgaggctgaGGACAGTGAACGTGAGCTCTCACCGGAGGAGATTGAAGAAGCTGCACAGGTTTATTCTGAAGGACTCAAAGATTTTACAGTCGTCACAGAGAGGAAACACCCAGTtctccCTCAGGAAGGAAAGAGAAACGTGTTGATCACCAGCGCTCTCCCGTATGTCAACAATGTGCCGCATCTGGGAAACATCATCGGCTGCGTCCTCAGTGCTGACGTGTTCGCCAGGTATGGGCGTCTGCGGGGCTGGAATCTGCTGTACATCTGCGGGACGGATGAATACGGCACGGCCACCGAGAATAAAGCCCGAGAGGAGGGTCTGACGCCGCAGCAGATCTGCGATAAATATCACTGCATCCACGCCTCCATCTACCAGTGGTTCCAGATCGACTTCGACTTCTTCGGCCGCACCACCACACAGCACCAGACAGAAATCGCTCAGGATATTTTCTGGCGTCTGCACGAGCGTGGTTTCCTCCTGGAGGATACGGTGGAGCAGCTGCGGTGCGAAGGCTGCCAGCGCTTTCTGGCCGACCGCTTCGTGGAGGGCGAGTGTCCACACTGCCGTTACCCAGAAGCCCGCGGGGACCAGTGCGATAAATGCGGACGCCTGATCAACGCTGTGGAGCTGAAGaaTCCTCAGTGTAAGGTGTGTAAGGAGACGCCGGTGATTCGCTCCTCCAAACACCTGTTCCTGAACCTGCCGAAGCTGGAGCAGGATCTAGAGCAGTGGCTGCAGACGTCGACGGCTGCTGGAGACTGGACCACTAATGCTCGTCACATCACTCGCTCCTGGCTGCGGGACGGTCTGAAGCCGCGCTGCATCACACGTGACTTGAAGTGGGGGACGCCGGTGCCGCACCCCGACTACAAGGAGAAGGTGTTCTATGTGTGGTTCGATGCTCCTATTGGCTACCTGTCCATCACTGCCAACTACACCGACCAATGGGAGAGATGGTGGAAGAACCCGCAGCAGGTGGAGCTCTATAACTTCATGGCGAAGGACAACGTTCCCTTCCACAGTGTGGTTTTCCCTTGTTCACTTCTCGGGGCTCAAGACAACTACACACTGGTCAATAACCTCATCGCCActgaatACCTGAATTACGAGGACACCAAGTTCTCCAAGAGTCGTGGTGTTGGTGTGTTTGGTGACATGGCGAAAGACACCGGTATCCCGTCAGACGTGTGGCGCTTTTACCTGCTCTACCTCCGTCCCGAAGGCCAGGATTCAGCTTTCTCCTGGACCGACATGGCCCTCAAAAACAACTCTGAGCTCCTCAACAACCTGGGGAACTTCATCAACAGGGCTGGGATGTTTGTGAGCAAGTTTTTCGACGGTTGTGTTCCTGAGATGCTGCTGAATGACGACGATAAGCGACTCATCGCTCAGGTCTGCTGGGAGCTCAAGCAGTACATCCAGCTGCTGGACAAAGTCAGGATCCGAGACGCGCTGAAGTGCATCCTCAACATGTCTCGTCACGGCAATCAGTACATCCAGCTAAACGAGCCCTGGAAGAAGATTAAAGGAGGAGCCGAGGACAGatgtcGTGCGGGGACTGTGACGGGTGTGTCAGTGAATGTGGCGTGTCTGCTGGCTGCTGTGCTGGAGCCCTTCATGCCCACAGTGAGTCTCAGCATCCGCTCTCAGCTCCAGGCTCCAGAGTCCAGCAGCAGAGCCATGCTGAGCGGCCCCGGGGCCTTCATCTGCACCCTGCCCGCCGGACACCGCATCGGCACGGTCAGTCCTCTGTTCCAAAAGCTGGAGAACGAGCAGATCGAGGCTCTGAGGAAGAGATTCGGAGGACTGCAGCCAGAAGAGGAGAGCGCAGGACTGAAGACTCCGAGTAACAGCAGCGTTGCAGTCGAGAGCAAACCCAACGCTGGAGCTGCACAACACACACCAGCCAGTGTGACTGCAGATCCAGAGAGAGCCAAACAACTCACAGCTTTAGTGGCAGAACaaGGTGAAAAAGTTCGAGCTCTGAAAGCACAAAAAGCCGAAAAATCTGCCATCGGAGTAGAAGTGGCCAAATTATTGGACCTGAAAAACCAACTTTGTCTTGCGGAGGGCAAGACCCCGGAGCCGCCCGCGCAAAAAACCAAGAAGAAATAAGGTGAACATGAGGATGGAGAGAAATCTTTGGGAATATTTTCTGGGGAAAATGCACTATTTATCCACTCCtacatatatattaaacaaatgcAACCAGTCCTTTTTAAATGATCCGTTTTTAGTAAGCAATCAAATCAATGTAAACCCAGTTTCATATTTCTGCTTTGTTACTCTGATGCTAATTAATTTTACTCAATAAACACAGAGACGAGAAATAAACACCA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0006418 tRNA aminoacylation for protein translation biological_process
GO:0006431 methionyl-tRNA aminoacylation biological_process
GO:0005829 cytosol cellular_component
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004825 methionine-tRNA ligase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030219-83 Predicted to enable ATP binding activity and methionine-tRNA ligase activity. Predicted to be involved in tRNA aminoacylation for protein translation. Predicted to act upstream of or within glutathione metabolic process and methionyl-tRNA aminoacylation. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in immature eye; midbrain; and somite. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2U. Orthologous to human MARS1 (methionyl-tRNA synthetase 1).

Ensembl:

ensembl_id ENSDART00000144911

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064570 lncRNA downstream 162140 58756526 ~ 58759100 (-) True XLOC_033265
TCONS_00065263 lncRNA downstream 187683 58731298 ~ 58733557 (-) True XLOC_033264
TCONS_00065262 lncRNA downstream 248660 58670705 ~ 58672580 (-) True XLOC_033263
TCONS_00065261 lncRNA downstream 838605 58081635 ~ 58082635 (-) True XLOC_033262
TCONS_00065260 lncRNA downstream 1131215 57787720 ~ 57790025 (-) True XLOC_033260
TCONS_00065264 lncRNA upstream 72897 59047907 ~ 59050828 (-) True XLOC_033269
TCONS_00065265 lncRNA upstream 75976 59050986 ~ 59052350 (-) False XLOC_033270
TCONS_00065266 lncRNA upstream 75976 59050986 ~ 59053205 (-) False XLOC_033270
TCONS_00065267 lncRNA upstream 76390 59051400 ~ 59052639 (-) True XLOC_033270
TCONS_00065268 lncRNA upstream 91945 59066955 ~ 59068903 (-) True XLOC_033271
TCONS_00064573 mRNA downstream 10838 58871600 ~ 58910402 (-) False XLOC_033267
TCONS_00064574 mRNA downstream 19688 58871966 ~ 58901552 (-) True XLOC_033267
TCONS_00064571 mRNA downstream 92842 58772209 ~ 58828398 (-) False XLOC_033266
TCONS_00064572 mRNA downstream 93127 58789586 ~ 58828113 (-) True XLOC_033266
TCONS_00064568 mRNA downstream 156568 58737168 ~ 58764672 (-) False XLOC_033265
TCONS_00064578 mRNA upstream 280126 59255136 ~ 59271436 (-) False XLOC_033274
TCONS_00064579 mRNA upstream 288122 59263132 ~ 59271270 (-) True XLOC_033274
TCONS_00064580 mRNA upstream 375447 59350457 ~ 59357256 (-) True XLOC_033275
TCONS_00064581 mRNA upstream 395811 59370821 ~ 59381391 (-) False XLOC_033276
TCONS_00064582 mRNA upstream 397802 59372812 ~ 59388625 (-) True XLOC_033276
TCONS_00064565 other downstream 1151582 57769542 ~ 57769658 (-) True XLOC_033259
TCONS_00064559 other downstream 1401717 57513834 ~ 57519523 (-) True XLOC_033255
TCONS_00064553 other downstream 1657595 57263510 ~ 57263645 (-) True XLOC_033251
TCONS_00064551 other downstream 2382115 56539009 ~ 56539125 (-) True XLOC_033247
TCONS_00064544 other downstream 3270989 55650119 ~ 55650251 (-) True XLOC_033238
TCONS_00064577 other upstream 161661 59136671 ~ 59136787 (-) True XLOC_033272
TCONS_00064585 other upstream 710135 59685145 ~ 59685261 (-) True XLOC_033280

Expression Profile

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