RNA id: TCONS_00065267


Basic Information

Item Value
RNA id TCONS_00065267
length 1007
lncRNA type inter_gene
GC content 0.24
exon number 2
gene id XLOC_033270
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 59050986 ~ 59053205 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aataataataataataaatctgtatGCATTGAGAATTGATGGTAACTGTCATTAAAAACAATATCACTGAATAATGATTTTctttatgttatttaattaataatttctattttgttgttattatttttgacaTCTAAGATGAtgcattgataataataacaatgaaaaagTATTGCATTGAGAAGTTCTGATGGAAAAGGTGTTTTACCTGTCAATAACAGTTGTTTTAATGATCCTAAAACAATTTTCTTTGTGTCATGATTATTTAGAATATCTGGATAGAAATTTGACCAGATCATGTGTTCAGGAGATCCATGCAtgctcaaaataataataaatctgaatGCATTGAGAActatgtttttcaaaatatcgtTTCCtttttgttatgattatttttgaAAGATGATGCATCAATGAtaataagaatttaaaaaaagtattgcaGTGAGAAGTTCTGATGGAAAAGGTgtttaattgataataataaatctagatgcatatataattgattaaataaaataataaatcagaatgCATTGAGAATTGATGGTAAATAAGATCaccatatatttattttcattatgcaACATAACATTTCTATTTTGGCATTATTATGTTTGACCTCTGAGATGAAATACCTGtgcatcataaaaaaaaatattgcattgaGAAGTTATGATTGTTTTACCTGTTATTAGAAGTTGTTTTAATGATCCTAAGATCATTTTCTTTGTGTCATGATTATTTTGAATATCTGAATAGAAATTAGACCAGATCATGTGTTCAGGAGATCCATGCATGctcaaaataatcataataattctGAATGCTTTGACAATTTGATGGTAACTTTCATTAAAATGGCCTCATTTAAAACTCAACAATCTTTTTCACAAtatcatttttcttttattattactatttttgtaaataataaatataaaatataggtAATAAAAATCTGCATGAATCCAGAAtgtataataactattattaaaaaattt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065264 lncRNA downstream 572 59047907 ~ 59050828 (-) True XLOC_033269
TCONS_00064570 lncRNA downstream 292300 58756526 ~ 58759100 (-) True XLOC_033265
TCONS_00065263 lncRNA downstream 317843 58731298 ~ 58733557 (-) True XLOC_033264
TCONS_00065262 lncRNA downstream 378820 58670705 ~ 58672580 (-) True XLOC_033263
TCONS_00065261 lncRNA downstream 968765 58081635 ~ 58082635 (-) True XLOC_033262
TCONS_00065268 lncRNA upstream 14316 59066955 ~ 59068903 (-) True XLOC_033271
TCONS_00065269 lncRNA upstream 115421 59168060 ~ 59171539 (-) True XLOC_033273
TCONS_00065270 lncRNA upstream 343208 59395847 ~ 59409082 (-) False XLOC_033277
TCONS_00064766 lncRNA upstream 356359 59408998 ~ 59421470 (-) True XLOC_033277
TCONS_00065271 lncRNA upstream 782991 59835630 ~ 59853683 (-) True XLOC_033281
TCONS_00064576 mRNA downstream 76381 58921240 ~ 58975019 (-) True XLOC_033268
TCONS_00064575 mRNA downstream 76390 58921240 ~ 58975010 (-) False XLOC_033268
TCONS_00064573 mRNA downstream 140998 58871600 ~ 58910402 (-) False XLOC_033267
TCONS_00064574 mRNA downstream 149848 58871966 ~ 58901552 (-) True XLOC_033267
TCONS_00064572 mRNA downstream 223287 58789586 ~ 58828113 (-) True XLOC_033266
TCONS_00064578 mRNA upstream 202497 59255136 ~ 59271436 (-) False XLOC_033274
TCONS_00064579 mRNA upstream 210493 59263132 ~ 59271270 (-) True XLOC_033274
TCONS_00064580 mRNA upstream 297818 59350457 ~ 59357256 (-) True XLOC_033275
TCONS_00064581 mRNA upstream 318182 59370821 ~ 59381391 (-) False XLOC_033276
TCONS_00064582 mRNA upstream 320173 59372812 ~ 59388625 (-) True XLOC_033276
TCONS_00064565 other downstream 1281742 57769542 ~ 57769658 (-) True XLOC_033259
TCONS_00064559 other downstream 1531877 57513834 ~ 57519523 (-) True XLOC_033255
TCONS_00064553 other downstream 1787755 57263510 ~ 57263645 (-) True XLOC_033251
TCONS_00064551 other downstream 2512275 56539009 ~ 56539125 (-) True XLOC_033247
TCONS_00064544 other downstream 3401149 55650119 ~ 55650251 (-) True XLOC_033238
TCONS_00064577 other upstream 84032 59136671 ~ 59136787 (-) True XLOC_033272
TCONS_00064585 other upstream 632506 59685145 ~ 59685261 (-) True XLOC_033280