RNA id: TCONS_00064580


Basic Information

Item Value
RNA id TCONS_00064580
length 1728
RNA type mRNA
GC content 0.49
exon number 3
gene id XLOC_033275
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 59350457 ~ 59357256 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAACTGAAGTGTGGGTGAAATGTCAACCACAGAAGAGGGAGGAATGTCTCACGCTTCCTGTGGGCGCAGATATGATATTGATCATATAATATAGATATTGATTTTAAAACTGCAAACATttgaggaggtgttgaagatcaTTTAACAACCGAAATCAAAACGCGCTTACATTCAACACGATATCAGTACTACAATACACAGTGAGTGTCTCCAGCGGAGGGGGCGGATCTTAACGGCGGGTCACCGATCAGCTGAGGCGGGATCTGCACAGGCTCATATCCACCGTTTCTCCGTTCATGTCGGAGCGATGTTTCAGCGCGTTTCTGGAGCTCCTTCAGTCCTGCAGCGGCTCGTGTTTACCGGCTGCTGCTGCCGCCGTGTTTACCGGAGATCACCGGCGGTCTCCGTACGCCACATTCTGCTGGAGGATCACGCTGGCGGATGGCGGACGGCGGTGCTCTCGGTGACCGGGTGTAGAGGATTCACCAGCGACACAAACACCGGGAAACTTCGGCCGCTTTTATCAGTTAGGTCTTCATTCCTGATGCAACCAAGACGGTCGTTAACGACACCGGAGAAACACGAGCGCGCGGCGGATATTCGCTCGgatggCGTGTCGTCTGCTGCTGACGGGTCGGAGCTGAAGGCCAGTAAAGTGCAGCAGCTCCGGCAGGTGTTTCAGCAGTACGGAGCGGTCGGCGTCTCCTTTCACATCTGCATCTCCCTCATCTCTCTGGGAATCTTCTACCTCGCCGTCTCCAGtggtCTGGATGTGGCGTCTCTGCTGTGTAAGCTGGGCTTCAGTGAGGCGGTGGTTCAGTCCCGGCTGGCTGCGGGTACGAGTGTGTTTGTTCTGGCGTACGCCGTACACAAGCTGTTCGCGCCGCTGCGCATCAGCATCACTCTGGTGTGTGTGCCGCTCATCGTACGACACCTCAGGAGGACGGGACTGTTTAGGAGCAGGACATCAGGaccctgagacacacacacacacacacacacacacacaaacacacacacacataaatacacatatgcatacacacacgctAACAGATTGATGCAGAACAGGTGcaacacactcacacgcacacacacacacacatacacacacacacacacataaacacactaataGACTGATGGAGACGAGTGGAAACaggagaaacacacactcatgcacacatgcatgtgtgcatacacacacacaagcacttatgtaaacacacacagactgatGCAGATGAATGTAAACAGGtgaaacacacattttcacactcgctctcacacatacacacacacgcatatacatcacactctcacacacatacacacccggatacaaacacacactaacaGGCTTTTGCAGACAAGTACAAAcaggtgaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactaacaggaCTCGTGAATGTGTTACCTGTGGTTtaatcctcctcctcctctgtaATCAGCAGCAGGTTTTATAAGCTCTTCATCAGGAATGTGGTGTGTGTTGGTTCGTCTTCATGTAAGACAGtcgtgttcatttatttaatattaatccgCTCCCTCAAACGGCCTCTCGGGAAGTTTTTGCTGACTGTTAATTTTATTGAAACTCTGAATGTGTATAATTGTAAAGACAATGCTATATTTGGCTATATctaattatacaataaaatatttgatcTA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050913-122 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Orthologous to human FAM210B (family with sequence similarity 210 member B).

Ensembl:

ensembl_id ENSDART00000074534

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065269 lncRNA downstream 178918 59168060 ~ 59171539 (-) True XLOC_033273
TCONS_00065268 lncRNA downstream 281554 59066955 ~ 59068903 (-) True XLOC_033271
TCONS_00065266 lncRNA downstream 297252 59050986 ~ 59053205 (-) False XLOC_033270
TCONS_00065267 lncRNA downstream 297818 59051400 ~ 59052639 (-) True XLOC_033270
TCONS_00065265 lncRNA downstream 298107 59050986 ~ 59052350 (-) False XLOC_033270
TCONS_00065270 lncRNA upstream 38591 59395847 ~ 59409082 (-) False XLOC_033277
TCONS_00064766 lncRNA upstream 51742 59408998 ~ 59421470 (-) True XLOC_033277
TCONS_00065271 lncRNA upstream 478374 59835630 ~ 59853683 (-) True XLOC_033281
TCONS_00065272 lncRNA upstream 616446 59973702 ~ 59974697 (-) False XLOC_033283
TCONS_00065273 lncRNA upstream 616446 59973702 ~ 59974747 (-) True XLOC_033283
TCONS_00064578 mRNA downstream 79021 59255136 ~ 59271436 (-) False XLOC_033274
TCONS_00064579 mRNA downstream 79187 59263132 ~ 59271270 (-) True XLOC_033274
TCONS_00064576 mRNA downstream 375438 58921240 ~ 58975019 (-) True XLOC_033268
TCONS_00064575 mRNA downstream 375447 58921240 ~ 58975010 (-) False XLOC_033268
TCONS_00064573 mRNA downstream 440055 58871600 ~ 58910402 (-) False XLOC_033267
TCONS_00064581 mRNA upstream 13565 59370821 ~ 59381391 (-) False XLOC_033276
TCONS_00064582 mRNA upstream 15556 59372812 ~ 59388625 (-) True XLOC_033276
TCONS_00064583 mRNA upstream 68892 59426148 ~ 59505589 (-) True XLOC_033278
TCONS_00064584 mRNA upstream 200245 59557501 ~ 59563597 (-) True XLOC_033279
TCONS_00064586 mRNA upstream 578694 59935950 ~ 59942335 (-) True XLOC_033282
TCONS_00064577 other downstream 213670 59136671 ~ 59136787 (-) True XLOC_033272
TCONS_00064565 other downstream 1580799 57769542 ~ 57769658 (-) True XLOC_033259
TCONS_00064559 other downstream 1830934 57513834 ~ 57519523 (-) True XLOC_033255
TCONS_00064553 other downstream 2086812 57263510 ~ 57263645 (-) True XLOC_033251
TCONS_00064551 other downstream 2811332 56539009 ~ 56539125 (-) True XLOC_033247
TCONS_00064585 other upstream 327889 59685145 ~ 59685261 (-) True XLOC_033280

Expression Profile

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