RNA id: TCONS_00065273


Basic Information

Item Value
RNA id TCONS_00065273
length 642
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id XLOC_033283
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 59973702 ~ 59974747 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cacacacacacacagctgaggaGAGAGAtcgagATCCAGAGGCGCCGGTGTGAAGCCATCCAGAAGCGTCTGCGCTGTCAGCTGAAGAAGACTCAGTCCAGCCAGCGGCGTCTGCGCAGCGACGTCACACACATGGAGAAGCAGCTGGAGGATCTGCGGCGTCTGGAGGAGCGATAAACACACTACAGCCTTACCTTACCTCTGATCTAATGCACACCAGCAGGTAAAACACGAGCACACCACAGCCTTACCCACATTTAAAGCATGCGCATTACGGTTAGACAGATCAGCGTTCAGATTCAGTGTTCAgtcagagtgtgtgtttggagGATCTGTTCAATAAATGAGCACACTCACAAACAGACGCTGCTCCGTTTCACACTTTCCTACTCAGAGTTTGTCTCGTTTCCAGTCTAAATatcttcattcactcattttccttcagctgagtccctttatccatcaggggtcgccacagcggaatgaaccgccaactattccagcatatgtttaacacagcggatgcctttcaagctgcaacccagtactgggaaacatccatacacactcatacactacggccagtgtagttgatcagttcccctatagcgcatgtgttcggactgtgggggaaaccggagc

Function

GO:

id name namespace
GO:0006086 acetyl-CoA biosynthetic process from pyruvate biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0045333 cellular respiration biological_process
GO:1990204 oxidoreductase complex cellular_component
GO:0045254 pyruvate dehydrogenase complex cellular_component
GO:0005967 mitochondrial pyruvate dehydrogenase complex cellular_component
GO:0004738 pyruvate dehydrogenase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065271 lncRNA downstream 120019 59835630 ~ 59853683 (-) True XLOC_033281
TCONS_00064766 lncRNA downstream 552232 59408998 ~ 59421470 (-) True XLOC_033277
TCONS_00065270 lncRNA downstream 564620 59395847 ~ 59409082 (-) False XLOC_033277
TCONS_00065269 lncRNA downstream 802163 59168060 ~ 59171539 (-) True XLOC_033273
TCONS_00065268 lncRNA downstream 904799 59066955 ~ 59068903 (-) True XLOC_033271
TCONS_00065274 lncRNA upstream 293060 60267807 ~ 60269211 (-) True XLOC_033289
TCONS_00064586 mRNA downstream 31367 59935950 ~ 59942335 (-) True XLOC_033282
TCONS_00064584 mRNA downstream 410105 59557501 ~ 59563597 (-) True XLOC_033279
TCONS_00064583 mRNA downstream 468113 59426148 ~ 59505589 (-) True XLOC_033278
TCONS_00064582 mRNA downstream 585077 59372812 ~ 59388625 (-) True XLOC_033276
TCONS_00064581 mRNA downstream 592311 59370821 ~ 59381391 (-) False XLOC_033276
TCONS_00064589 mRNA upstream 43486 60018233 ~ 60020385 (-) False XLOC_033284
TCONS_00064588 mRNA upstream 43486 60018233 ~ 60020385 (-) False XLOC_033284
TCONS_00064587 mRNA upstream 43486 60018233 ~ 60020385 (-) True XLOC_033284
TCONS_00064590 mRNA upstream 49370 60024117 ~ 60031693 (-) True XLOC_033285
TCONS_00064591 mRNA upstream 68306 60043053 ~ 60049272 (-) True XLOC_033286
TCONS_00064585 other downstream 288441 59685145 ~ 59685261 (-) True XLOC_033280
TCONS_00064577 other downstream 836915 59136671 ~ 59136787 (-) True XLOC_033272
TCONS_00064565 other downstream 2204044 57769542 ~ 57769658 (-) True XLOC_033259
TCONS_00064559 other downstream 2454179 57513834 ~ 57519523 (-) True XLOC_033255
TCONS_00064553 other downstream 2710057 57263510 ~ 57263645 (-) True XLOC_033251