RNA id: TCONS_00064587


Basic Information

Item Value
RNA id TCONS_00064587
length 357
RNA type mRNA
GC content 0.52
exon number 5
gene id XLOC_033284
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 60018233 ~ 60020385 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGATTACTGGAAGTCGCAGCCGAGGAAGTTCTGTCAGTACTGTAAANCGGATAATAAACCCAGTGTCGAGTTCCACGAGAGAGGAAAGAACCATAAAGAGAATGTGGCCGCCAAAATACAAGAGATTAGGAAGAAGAGTGTGGCGAAGGCCAAGCAGGAGAAGAAGATGTCCAAAGACTTCGCAGCGATGGAGGATGCGGCTCAGAAGGCGTACGAGGAGGATCTGAAGAGACTCGCCGGACACACCtcaggtgagaGTGTGTGTTCTGCTAAAGCTCCAGCTGAAGCTCCAGTTAGGAAACAGAAGAAGCTGAAGCCCAGTGCGGTAAAGCCCCGCTCGGACCCCAGCAGCAGC

Function

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0008380 RNA splicing biological_process
GO:0071011 precatalytic spliceosome cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-050522-342 Predicted to enable RNA binding activity. Predicted to be involved in RNA splicing. Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of precatalytic spliceosome. Orthologous to human WBP4 (WW domain binding protein 4).

Ensembl:

ensembl_id ENSDART00000098247

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065273 lncRNA downstream 43486 59973702 ~ 59974747 (-) True XLOC_033283
TCONS_00065272 lncRNA downstream 43536 59973702 ~ 59974697 (-) False XLOC_033283
TCONS_00065271 lncRNA downstream 164550 59835630 ~ 59853683 (-) True XLOC_033281
TCONS_00064766 lncRNA downstream 596763 59408998 ~ 59421470 (-) True XLOC_033277
TCONS_00065270 lncRNA downstream 609151 59395847 ~ 59409082 (-) False XLOC_033277
TCONS_00065274 lncRNA upstream 247422 60267807 ~ 60269211 (-) True XLOC_033289
TCONS_00064586 mRNA downstream 75898 59935950 ~ 59942335 (-) True XLOC_033282
TCONS_00064584 mRNA downstream 454636 59557501 ~ 59563597 (-) True XLOC_033279
TCONS_00064583 mRNA downstream 512644 59426148 ~ 59505589 (-) True XLOC_033278
TCONS_00064582 mRNA downstream 629608 59372812 ~ 59388625 (-) True XLOC_033276
TCONS_00064581 mRNA downstream 636842 59370821 ~ 59381391 (-) False XLOC_033276
TCONS_00064590 mRNA upstream 3732 60024117 ~ 60031693 (-) True XLOC_033285
TCONS_00064591 mRNA upstream 22668 60043053 ~ 60049272 (-) True XLOC_033286
TCONS_00064592 mRNA upstream 56071 60076456 ~ 60104628 (-) False XLOC_033287
TCONS_00064593 mRNA upstream 56072 60076457 ~ 60079551 (-) False XLOC_033287
TCONS_00064594 mRNA upstream 83906 60104291 ~ 60104628 (-) True XLOC_033287
TCONS_00064585 other downstream 332972 59685145 ~ 59685261 (-) True XLOC_033280
TCONS_00064577 other downstream 881446 59136671 ~ 59136787 (-) True XLOC_033272
TCONS_00064565 other downstream 2248575 57769542 ~ 57769658 (-) True XLOC_033259
TCONS_00064559 other downstream 2498710 57513834 ~ 57519523 (-) True XLOC_033255
TCONS_00064553 other downstream 2754588 57263510 ~ 57263645 (-) True XLOC_033251

Expression Profile

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