RNA id: TCONS_00064591


Basic Information

Item Value
RNA id TCONS_00064591
length 2434
RNA type mRNA
GC content 0.46
exon number 11
gene id XLOC_033286
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 60043053 ~ 60049272 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCAGACAATATTAGTTCCGCTTGACTTTCGTTCCGCGGCTCCACGAGACTGAAGCAAAGCGCGTCATGAGCGCCGAAAACTCGCGTTCAGAAGCGCTGCTTCCGCTGAGAAACCTCTGGAACTCGGTGAAGTGCAGCAGGGATCGAGTGAGAGATGGAGAGTCCAACGACAGCAGCGGCACCTTCAGCTTGGCCAACTTCTGGGAGATTCTGAATGAAGCTGTAAAAGCAGTGTCTCAAGAAGCGACTAAACTCAGCCTGATGTTCTCCAAGCCGCCACTGCCGTCAGACGAGGATTGTGCAAAAATGGGGGAGTGTGTGCAGAAGAGTGTGTTGACCTTGTGCACCGTTTACTTCTGGCTGCCAAAGAGTCAAGGAGTCACACTGAGGAGGTCTGTCAGGGACGCCACCGCTGAGGTTCTGGAGGGTCTGGTTCAGCTGCTGGATGTCATTCTGTCCTCACCTGGACAAAGTCTCTCGCAGGAGCAGCTCACCTCCACCGGGAGTGTTTGGGCCGCATGTGACCATTTTGACCAGATACCCAAAGATAACCGCAGTGCTGTTCTGGCCGTCTTGAGCTCGTGTGTGGGTTTGGTGAAGGACGCTCTGGAGGAGATGCAGCAGGCTCTGGCTGAGTCACAGGACCCGTTTGGAGACGTcctggatgatgatgatgatgatgaaggtggTCGTGGGAATCAGGACAGGTATTGGTCAGCGTCAGACCGGcagctgattggtcagtgtgAGGGTCTGCTGAAGGCATCTGCAGCCAGTCTGCGCAAACTCTCGTCTGCGGTCAGACACAACGCTCAGCTGGAGACGGAGCAGGAGATCGCTCAGCTGGACGACCTGGCGGACGCTGCAGCACATGTCAGTCCCTGtgttgaTGACCTGGCCCTTAGCCTTTACCCGCCTGTGGACCGAGCTGCCGTGGAGCAGAACGTGTGCAGACTGGCAGCTGTGCTGAAAAAACTGCTGGACATCACCAGGTCCTCTCATGTCTGTGCGGAGGCCGATGTGTCCTGGGTGGAGTTTCTGAGTGGAGCTGTTGAACACAACCTGGAGAAGGTCAGATCACTGCTGAGGAGCGGCTCGTAGCGCACGGAgagacggtgtgtgtgtgtgtgtgtgtgtacaggtttagCTACTCTTGTGAGGACTTGTATGTTTTCATGTATATAGTGAAATATTAAAAGGATCCATTATTGAGGATATTTTACTGCTTGTAAAATTCTCAGCAGATGTTCATCAGTGTGTGCAGTTGTGTGTGTGAGGGTTGGGTTAGGGGTAGAGTTATGGTTAAGCCATAGACATCATTAACCTGAgagaaaaacaatggaagtctaATCTAATGTCCTCACTAAGAtgaaacaaacctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtacttatttttatatcctgctggggacttaaacctgaatgcacaCAGATTCATGGGGACTTGTATCACAGGGAGGATCAATATTGAGGTCTTCATGGGTAAACAAGCTCATAAATCGGTCAGAATGAAGGATTGTAAAGATGTAAACGTGCAGAGTGTTTGCGTTGAGGGTTAAGTTTTAAGAATAAACAGTCCGCACAGTAGAAACATCACTACAGGTATGGAGAGTCCCCACTTGGATATcggaacaagtgtgtgtgtgcgtgcatgcatgtgtgcgtgAAGTATCCAGAGCTTTTACTGCAGAGGAGAATCAACAACAGCACAAACAAACTGAGCTTGATCTGCAGCCGTGGAGGAGTCTGAGCCTCAGAAATATTGACATGTGTTTTCATGCTTTTATTCACAATATCTTCTGTTTATCTTCTGCTCATTCTGTAATGTTCGTCATATTACAGATATTAATATTACATATGACTTGCTTCattaacagaacaaaacagacttttaattcaaatgtttatttattctgATTAAACGCATAATGCTAATGCTCCAACGAGTGCTTAAAATCCTTGAGAGTTGgagaattaaaaataaagattgaacacacaaaaacatgaaaacattacAAAACCCTAGAGTTGTTCTgaaaataaagacacacagataaaaacctgaaaagtgcttgaattaattttgtgcaagaagttttggtggaaaaaaaagatcccacattattttctatttattatacaGTTCATCTCCAGGTGAACATTCTGTTgtttctactatgaaagtcaatgatgagtttgttttgtgttcaacagaaaatctCTGATACTTtgtgaatgaaataaatatacaaactgcAAAGCCCTAGAAGTTTTCTGCAAATAAAGACACAAAGATAAAGATCA

Function

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0007049 cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-070410-17 Predicted to act upstream of or within regulation of cell cycle. Located in cytoplasm. Is expressed in hepatocyte; intestine; kidney; liver; and testis. Orthologous to human CCNDBP1 (cyclin D1 binding protein 1).

Ensembl:

ensembl_id ENSDART00000057466

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065273 lncRNA downstream 68306 59973702 ~ 59974747 (-) True XLOC_033283
TCONS_00065272 lncRNA downstream 68356 59973702 ~ 59974697 (-) False XLOC_033283
TCONS_00065271 lncRNA downstream 189370 59835630 ~ 59853683 (-) True XLOC_033281
TCONS_00064766 lncRNA downstream 621583 59408998 ~ 59421470 (-) True XLOC_033277
TCONS_00065270 lncRNA downstream 633971 59395847 ~ 59409082 (-) False XLOC_033277
TCONS_00065274 lncRNA upstream 218535 60267807 ~ 60269211 (-) True XLOC_033289
TCONS_00064590 mRNA downstream 11360 60024117 ~ 60031693 (-) True XLOC_033285
TCONS_00064589 mRNA downstream 22668 60018233 ~ 60020385 (-) False XLOC_033284
TCONS_00064588 mRNA downstream 22668 60018233 ~ 60020385 (-) False XLOC_033284
TCONS_00064587 mRNA downstream 22668 60018233 ~ 60020385 (-) True XLOC_033284
TCONS_00064586 mRNA downstream 100718 59935950 ~ 59942335 (-) True XLOC_033282
TCONS_00064592 mRNA upstream 27184 60076456 ~ 60104628 (-) False XLOC_033287
TCONS_00064593 mRNA upstream 27185 60076457 ~ 60079551 (-) False XLOC_033287
TCONS_00064594 mRNA upstream 55019 60104291 ~ 60104628 (-) True XLOC_033287
TCONS_00064595 mRNA upstream 93347 60142619 ~ 60147517 (-) True XLOC_033288
TCONS_00064585 other downstream 357792 59685145 ~ 59685261 (-) True XLOC_033280
TCONS_00064577 other downstream 906266 59136671 ~ 59136787 (-) True XLOC_033272
TCONS_00064565 other downstream 2273395 57769542 ~ 57769658 (-) True XLOC_033259
TCONS_00064559 other downstream 2523530 57513834 ~ 57519523 (-) True XLOC_033255
TCONS_00064553 other downstream 2779408 57263510 ~ 57263645 (-) True XLOC_033251

Expression Profile

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