RNA id: TCONS_00064592


Basic Information

Item Value
RNA id TCONS_00064592
length 811
RNA type mRNA
GC content 0.58
exon number 4
gene id XLOC_033287
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 60076456 ~ 60104628 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGACTTGAATGAGGTGCGCGCAGACGCTGGAAAGTAGTACAAACCGTCTGGGAATAACGGGAATACTGGAGCACAGCGGCCAGACAGCGGGCCGGGGGCGGGGGGACGGCGGTTAGAGGACGGTAGACACAGAATAGGAAAAGCCTGCGTCAATGTTTTTATTCGACAACGCGCGCTGAGGCGACCGACTAACCAACCGACAAACCGTCCGTTTTTCACATCGATTTCCTCAATGTTCAGCTTCATGGGTCTGACGAACGGAACCACCGACACCCTCGCCAATGTCTCCTGTACATGTAACTGCCAGAGATCCACTTCATTCCAGAGTATGGCGATCTcccaGCTGGAGTTTGTTCAGATTCTGGTGATcgtggtggtgatgatgatgatggtgctgGTGATCACGTGTTTGCTGAACCACTACAGACTCTCAGCGCGATCTCTGATGTCCAGACACACACACGAGCGCAGACGACACCTGCCCCTGCCCTcgGAGGGCAGTCTGTGGTCTTCTGATGGGCCAGGCTCTTCTAGTGCCATGAGTGAGGTTTACACTCCTCGAGCGCCGGATAGAGTGCCGTCGTTCCTGCAGCGTGAGCGCGTGTCCCGCTTCCAGCCTACCTTCCCATTCCTCCCTCCAGTGATCGAACTGCCTCCGACCATCGCTCTGTCTGACGGCGAGGAACCTCCGCCGTATCAGGGGCCATGCACGCTTCAGCTGCGGGACCGTGAGCAGCAGCTGGAGCTCAACCGGGAGTCTGTGCGCCCGCCGCCCAACCGCACAGTGTACGACAGCGCGCTCACACACACG

Function

GO:

id name namespace
GO:0060394 negative regulation of pathway-restricted SMAD protein phosphorylation biological_process
GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway biological_process
GO:0010991 negative regulation of SMAD protein complex assembly biological_process
GO:0000139 Golgi membrane cellular_component
GO:0031901 early endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0070412 R-SMAD binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-320 Predicted to enable R-SMAD binding activity. Predicted to be involved in negative regulation of SMAD protein complex assembly; negative regulation of pathway-restricted SMAD protein phosphorylation; and negative regulation of transforming growth factor beta receptor signaling pathway. Predicted to act upstream of or within negative regulation of signal transduction. Predicted to be located in endosome and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane and early endosome membrane. Is expressed in brain; liver; ventricular zone; and yolk syncytial layer. Orthologous to human PMEPA1 (prostate transmembrane protein, androgen induced 1).

Ensembl:

ensembl_id ENSDART00000057463

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065273 lncRNA downstream 101709 59973702 ~ 59974747 (-) True XLOC_033283
TCONS_00065272 lncRNA downstream 101759 59973702 ~ 59974697 (-) False XLOC_033283
TCONS_00065271 lncRNA downstream 222773 59835630 ~ 59853683 (-) True XLOC_033281
TCONS_00064766 lncRNA downstream 654986 59408998 ~ 59421470 (-) True XLOC_033277
TCONS_00065270 lncRNA downstream 667374 59395847 ~ 59409082 (-) False XLOC_033277
TCONS_00065274 lncRNA upstream 163179 60267807 ~ 60269211 (-) True XLOC_033289
TCONS_00064591 mRNA downstream 27184 60043053 ~ 60049272 (-) True XLOC_033286
TCONS_00064590 mRNA downstream 44763 60024117 ~ 60031693 (-) True XLOC_033285
TCONS_00064589 mRNA downstream 56071 60018233 ~ 60020385 (-) False XLOC_033284
TCONS_00064588 mRNA downstream 56071 60018233 ~ 60020385 (-) False XLOC_033284
TCONS_00064587 mRNA downstream 56071 60018233 ~ 60020385 (-) True XLOC_033284
TCONS_00064595 mRNA upstream 37991 60142619 ~ 60147517 (-) True XLOC_033288
TCONS_00064585 other downstream 391195 59685145 ~ 59685261 (-) True XLOC_033280
TCONS_00064577 other downstream 939669 59136671 ~ 59136787 (-) True XLOC_033272
TCONS_00064565 other downstream 2306798 57769542 ~ 57769658 (-) True XLOC_033259
TCONS_00064559 other downstream 2556933 57513834 ~ 57519523 (-) True XLOC_033255
TCONS_00064553 other downstream 2812811 57263510 ~ 57263645 (-) True XLOC_033251

Expression Profile

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