RNA id: TU10067


Basic Information

Item Value
RNA id TU10067
length 415
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G7388
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 24811462 ~ 24812084 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCTGTACCAAAAACTCTCCTGGTTGCACTCTCTAAacaccctcctctcctcttctgtgGGGATGTACTCCATGCCCACTGGAGCCTGCAGCTCTCTGCTGCCGCTCCTCTGTAAAACCTGTAGTGGTGGACGTCATGTTGACAGCAATGTCAGTGCTAATTTAAACTTTTAAAGCTTATAAAATAACAATCTGTAAGCCACTCGGCGGTCTGACTTCTTTACTGTCGGGCACAATGTCATTATAGCGCTGACATAACCCGGaagtaaaatttaaaaaagttgcTATTTGTGGGTTAGCTGAAGCGACAATAgtgcttttataacaatacgctggggaaattatttttaaaaattatcATACATTACTGTTTCACTAGTGTACCAAATCCTTAGTCAATCAAAATTTAAACTggg

Function

GO:

id name namespace
GO:0016741 transferase activity, transferring one-carbon groups molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0008276 protein methyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10061 lncRNA downstream 47772 24761914 ~ 24763690 (-) True G7383
TU10020 lncRNA downstream 142165 24665385 ~ 24669297 (-) False si:ch211-243a20.3
TU10027 lncRNA downstream 159241 24651943 ~ 24652221 (-) True G7352
TU10026 lncRNA downstream 168359 24642823 ~ 24643103 (-) True G7351
TU10025 lncRNA downstream 188906 24622350 ~ 24622556 (-) True G7350
TU10211 lncRNA upstream 441222 25253306 ~ 25254219 (-) True G7506
TU10271 lncRNA upstream 663359 25475443 ~ 25512353 (-) True G7551
XR_005640729.1 lncRNA upstream 712771 25524855 ~ 25525679 (-) True LOC120568431
XR_005640720.1 lncRNA upstream 734051 25546135 ~ 25549752 (-) True LOC120568384
TU10300 lncRNA upstream 786614 25598698 ~ 25599084 (-) True G7577
XM_039815613.1 mRNA downstream 5775 24789998 ~ 24805687 (-) False slc34a2a
XM_039816371.1 mRNA downstream 5775 24789998 ~ 24805687 (-) True slc34a2a
XM_039777008.1 mRNA downstream 51844 24756643 ~ 24759618 (-) False LOC120543531
XM_039821542.1 mRNA downstream 118095 24688165 ~ 24693367 (-) True emp1
XM_039821437.1 mRNA downstream 142232 24665387 ~ 24669230 (-) True si:ch211-243a20.3
XM_039797529.1 mRNA upstream 4949 24817033 ~ 24818746 (-) True rhbdd2
XM_039797579.1 mRNA upstream 14325 24826409 ~ 24828776 (-) True LOC120557339
XM_039798618.1 mRNA upstream 20077 24832161 ~ 24836579 (-) True LOC120557916
XM_039798599.1 mRNA upstream 25469 24837553 ~ 24851233 (-) False fip1l1b
XM_039798590.1 mRNA upstream 25469 24837553 ~ 24851233 (-) True fip1l1b
TU10046 other downstream 51862 24755932 ~ 24759600 (-) True LOC120543531
TU9991 other downstream 276146 24532236 ~ 24535316 (-) True G7323
TU9657 other downstream 1000498 23774725 ~ 23810964 (-) False palm3
TU9658 other downstream 1031138 23774725 ~ 23780324 (-) False palm3
TU9637 other downstream 1042621 23752026 ~ 23768841 (-) True G7071
TU10312 other upstream 886177 25698261 ~ 25699557 (-) True G7589
TU10328 other upstream 971860 25783944 ~ 25788229 (-) True G7603
TU10486 other upstream 1189440 26001524 ~ 26003263 (-) True G7722
TU10488 other upstream 1189440 26001524 ~ 26009217 (-) False G7722
TU10489 other upstream 1189440 26001524 ~ 26009217 (-) False G7722

Expression Profile