RNA id: TU10327


Basic Information

Item Value
RNA id TU10327
length 4006
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G7603
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 25783944 ~ 25788229 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCATCTTCATACCAAACCATTCGTCAACAGCTCCTTCTTCCTCGCGATAGCAAATGCAATTAGTTCATTATGTAATTACAGGAAGGGAGCAGCAAAAAACAGAGCCAGCCCcataagaaaagaaaaccaagaagaggaaaataaaaataacattttttttctcttttttttctcaagtgCAGATTTGAAGACCTTAGGCATGCCATTGTCTGTTATGGTTTCCAGTTGTCTGTTCTACAGTGTAATTTTATCTGTACATGGCTATAAGGGTAACAGCACGAGGGGGATGACAGGTACATGATGTGCGCGGAAGtgtctgtttttaaaaatgtctcaATAAGTGGGCGATGGACTCTTCTCTCTACactcttctctgtctgtctcccctcTCTGTTTTGCAGTAGACTGAAAGATATTCATGTTTAAACGTGCAGtataaaaaaagatacacacccacacagattCATGTACAGCAAGTTCCCTTAAATCTGGTTGGGAGGGTTTGAAAGGTGCCATAATGAAACTGCCAGAAAACAGCAGTTTGAAGAAATATCTGCCACTTTGAAGAGGCAGTGCTGTGTCAAGAGTCTCTTTCCAAAGCTCACAAACTGGACGTCAGTTCTTCAAGACTTTTCTGGCCTCCAAGGGATGGAGACACACTTATCTCAACTATTTCTCCCAGAGAAAGAGCATGTGTCCTTCtgtctctcagtgtgtgtgccTCGTACTCCATGCATTAGGCCTTTAGTTTTGTTACATCCTCAGCACAGTCCATCAATAACAGAGCTCAGTAAACAGCCATGTTGGGGATTTGGGGGTAATGAAGGCTTAGGGAGTTAAGTACATCAGTGGCCTAAAACAAGCTAAAGGGAGTCGGTCACAGAGTTGTAGGTATATACAGGTATACAAAGTGTAATCACACACATGGAGCACACTCATTTCTCAGGACGATTACCAATGTAGAATGAATGTACAGGACTCACTACTTTACTGTTTCCGCACGTCCAGTTACCTTTCAGTGAGGGCACAGTCAAGCAGCAACAATGTGTGGCCAAAACCACAAGTAGTTAGTTAATAAGTTGAACATTGTCGCACATCTTACCTGAGTGTTGCTCTCTTTTCTGACTAACTCTATGATCTACAAGGACCTATGAACTAAATTGTAGCACCTCCTTTTACAAGCATGTCCCCCTGCCTGATCTGATCCAAAACAACCAGAAAAATGAAGAGACACACTTTCTGGCAATTTTCAGAAGTGTTACATTCGCCAATCCAGACATTAATGAGATCAGTGCAGATCaagggaggagaagagaggagaaaagaaactCATTAAGACCACAGGGACGACCTAACCCTATTATCCCTATCACACCACTGAACCACACACTGATGATGGGAATTAAGATGTGCTGGCCTCGATCCACACCCACTCTTCAACCCAGTGCAGCAGAGTGTGTCTGGAGTCGTGCAGTAGCTGCTGGGAAGGACGAATGTGAAGGAGTCGGTTATCTGTGCAGTTTAGCACAGCAGTATGGGGCGTGTTCAGGTCGGCACTGTGTGGTGAAAAGGGTGCAGCAGAACTCTGCGCTCCCACTACATTGTGTTCTTTTTTGTTACAGCCTGCGCCTCAGCACCTTTAGTGCCCACTTTGGGCTGTGGAAACTGAGATAAAGGCCCAAGGTTACACCAAACTCACTCCATGATAAAGTGGGAACAATTTCATCCACTGAAGCTAACTCCCTTGCTGCCATCATTATCTCCATTTCTCCGTAAgcacacatatataatacagATGTATCCAAATAGGCGTGGTATCCAAAAAGGCGTGTGgtttaaaaaagagagaaaaaaagttagCATTATCTTTCTTTCATGCATAgtccatttttcttttcctttttttcttacagAATTTTGGTTTTTCTATGAGTCCTACTTACAGTATGCAGAAAATCCCCTATTCCCACATTGTCTATCATTACATACATCAGATGACGTGTTTGAAATTCCCTTTAATGTAGCCCAACACATCAGTCAGAGAGATGAGTaattatttaaatacatttcatgtTTAAATACTGACTGGGGGAGCAGGCAAAATGCTACAGCTAGTTCAATGAAAGGCAATATGTTAAAAAATGATGAATaagtgcacatacacacatagtgCATATGAATTGCGCAGTGCGCGTATCTTAATATGGGTTTGTGTCTCTACCTATGTTTTAATATGccgtatttgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgcttaatgTTTTCTGTATGAAAGTTAATGCAAGTTATTATATACTTCATGTTACACGGCCACTGAATCATGTCATAAACTGTGGCCCTATGCATGTTCACATTCTGTAAATGCACTGTATGAGTTTGTGGTTGCATGcttaggtctgtgtgtgtaagtgcgtgcatgcgtgcatgtgtatatgtgtgtgtatgtgtgtgcgaaAGAACATTTATGATACATGAACACTATTAGGATACAGTAGGTGTGTAGTGAACTCAGCACCTCTGTATACTCCGAAACGGcggacagcagcagagagataCAACTGCTGCCTtttcaaatacacacatacaatatatacatacagactGAGTGtgaaggtaaaataatgaacatATTTTCACACACGCTGGAATTCTGTGGCACTACTGACACTCTCTGAGAATCTTGTATGGTTACATTTGATTActgtaaaaaaagtattttcacaTTGTTGCAGTTTATTCTGaatcatttgtttttaaagataccTGATTTTAGAGATCAGCACATTTTTCTACCGTGTAACTGTACAGTGACCACACTTTTGTCAGTACTTTGATACACTGTTTATGACTTGTTAAGATTCTCACGGGATTAGCAGTTTGATTGGTTAATATCCCCGTCTTGTGTTGCAATAAAGTTGATTAGGCATTAGAAAGTTTGATTGGCTTGAATTAGATCCAAATAACTCAATCAAAGACCCGTTACTTCTTTTCATCTATTTTAACTGGATAAGACCTCTGTGGTTTTTCAGCAGATGGTTCACCAGTTGAGTCCAAATCTTGACTGCTGTTGCCTCAGTGAAAGTTTTTATATGCATCGAGGCATTTATAGAATCGGGATTTACTCAGTCTTAATGTCTCTCTTCTTCACACAGATCCCTCTGTGTTAGAAGGTCAGGCATGCATTGGATTCAGGTAaaaagatgaagacatgaagtTGTCCTCCACATAGACATAAACGGATCTTTGCCTGTAGGCAACTTTCAttgatagttaaaaaaaaaacttctttttttttttttaaagtactcCTAGTCCGAGCTCTCTGAAGAGTGGACCCATCACTTGCTAAGTTTAGGTGCCTATAAATAATAGTCGGAATCCAAGCCAATCTTTTCTCACATTTTCACATGTTCACGGATTTAAAAGGCCTTCCAAACTGATGACTTGCCAGTAAAGTCTTAACCctccctgctttttttttagaaaagggTGTGGTGTGTTGATGATTGCTCCGTTGCAAGGCTATCACAGGTAAACCTCTCGGCGTGACAACGTGAGGCAGGACGTGGTCTTGTAGTCCCCTCCTGTCCGCGTCAGTGGTATGACTTCAGGTGGGTTCTTgccttctcctccttcctcctcttgcTGGCGCCTCCCGAAGCCTGCGCTGCTAAATGTGTCATATGATGCCGAAGTCATCTTGCGGTTCAGAAGGTTACGGTTGTGATCGCCCATGTTTCTGTTGCGGTCTCCACTTCCCAGGGTGCCGAGAGGATCCCCATTGGCTAAGGGTAATCTCTGACCTTCTCCGCCGACAACCACCCCGGGTTCTGAGCTCCCTGCACTGCCAGCGCTCTCGCTGTCACTCTCATGGTCGTTACCACGGAGATTGTTATTATCATCTCCGGGGGCGAAGGTGGAGAGCCGTGGGGGGTCGCTGCCGTGGCGCTGGCGAGGCGAAGGGCGGACGGGCATCCAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10325 lncRNA downstream 1623 25782169 ~ 25782601 (-) True G7602
TU10324 lncRNA downstream 5280 25778657 ~ 25778944 (-) True G7601
TU10323 lncRNA downstream 25959 25757405 ~ 25758265 (-) True G7600
TU10322 lncRNA downstream 31883 25751170 ~ 25752341 (-) True G7599
TU10300 lncRNA downstream 185140 25598698 ~ 25599084 (-) True G7577
TU10387 lncRNA upstream 47398 25835627 ~ 25837814 (-) True G7646
TU10388 lncRNA upstream 49748 25837977 ~ 25838762 (-) True G7647
TU10495 lncRNA upstream 228231 26016460 ~ 26018100 (-) True G7726
TU10500 lncRNA upstream 232979 26021208 ~ 26110065 (-) True G7730
TU10507 lncRNA upstream 250062 26038291 ~ 26039107 (-) True G7737
XM_039815686.1 mRNA downstream 202546 25576779 ~ 25581678 (-) True LOC120568214
XM_039815614.1 mRNA downstream 204463 25576779 ~ 25579761 (-) False LOC120568214
XM_039815800.1 mRNA downstream 254822 25512589 ~ 25529402 (-) True LOC120568337
XM_039783113.1 mRNA downstream 304514 25476830 ~ 25479710 (-) True LOC120547284
XM_039784368.1 mRNA downstream 313534 25467097 ~ 25470690 (-) True smim18
XM_039811521.1 mRNA upstream 8970 25797199 ~ 25808606 (-) True crmp1
XM_039811526.1 mRNA upstream 8970 25797199 ~ 25808605 (-) False crmp1
XM_039811534.1 mRNA upstream 8970 25797199 ~ 25807763 (-) False crmp1
XM_039800434.1 mRNA upstream 32825 25821054 ~ 25829233 (-) False ppp2r2ca
XM_039800417.1 mRNA upstream 32825 25821054 ~ 25829233 (-) False ppp2r2ca
TU10312 other downstream 84667 25698261 ~ 25699557 (-) True G7589
TU10046 other downstream 1024624 24755932 ~ 24759600 (-) True LOC120543531
TU9991 other downstream 1248908 24532236 ~ 24535316 (-) True G7323
TU9657 other downstream 1973260 23774725 ~ 23810964 (-) False palm3
TU10486 other upstream 213295 26001524 ~ 26003263 (-) True G7722
TU10488 other upstream 213295 26001524 ~ 26009217 (-) False G7722
TU10489 other upstream 213295 26001524 ~ 26009217 (-) False G7722
TU10490 other upstream 213295 26001524 ~ 26009217 (-) False G7722
TU10491 other upstream 213295 26001524 ~ 26009217 (-) False G7722

Expression Profile