RNA id: TU10388


Basic Information

Item Value
RNA id TU10388
length 237
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id G7647
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 25837977 ~ 25838762 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGGATAGCAGATGTCATCAATGTATTCAACTTGCATGTATGGCAGTCGAGTGCTTTTTTCTCTGTTCATTATGTCAATGGGCTTGATTTTGAactcttttttctctttgtccCCTTGTGCGAAGAATTCCATGGTAACTAGCTTGGCAATCCTTTTTTGTTCAGGCCAAGGCTTTGTGATAGCAGAGAGGTCACTGGCTGTCATCAACATCGACcTCAGTAAATCTTTTTGTTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10387 lncRNA downstream 163 25835627 ~ 25837814 (-) True G7646
TU10327 lncRNA downstream 49748 25784224 ~ 25788229 (-) False G7603
TU10325 lncRNA downstream 55376 25782169 ~ 25782601 (-) True G7602
TU10324 lncRNA downstream 59033 25778657 ~ 25778944 (-) True G7601
TU10323 lncRNA downstream 79712 25757405 ~ 25758265 (-) True G7600
TU10495 lncRNA upstream 177698 26016460 ~ 26018100 (-) True G7726
TU10500 lncRNA upstream 182446 26021208 ~ 26110065 (-) True G7730
TU10507 lncRNA upstream 199529 26038291 ~ 26039107 (-) True G7737
TU10524 lncRNA upstream 236635 26075397 ~ 26077242 (-) False polq
TU10535 lncRNA upstream 297138 26135900 ~ 26136838 (-) True G7765
XM_039800434.1 mRNA downstream 8744 25821054 ~ 25829233 (-) False ppp2r2ca
XM_039800417.1 mRNA downstream 8744 25821054 ~ 25829233 (-) False ppp2r2ca
XM_039800427.1 mRNA downstream 9026 25821054 ~ 25828951 (-) False ppp2r2ca
XM_039800423.1 mRNA downstream 9026 25821054 ~ 25828951 (-) True ppp2r2ca
XM_039811521.1 mRNA downstream 29371 25797199 ~ 25808606 (-) True crmp1
XM_039798973.1 mRNA upstream 122965 25961727 ~ 26000026 (-) False camk2d2
XM_039798925.1 mRNA upstream 122965 25961727 ~ 26000026 (-) False camk2d2
XM_039798958.1 mRNA upstream 122965 25961727 ~ 26000026 (-) False camk2d2
XM_039798917.1 mRNA upstream 122965 25961727 ~ 26000026 (-) False camk2d2
XM_039798892.1 mRNA upstream 122965 25961727 ~ 26000026 (-) False camk2d2
TU10328 other downstream 49748 25783944 ~ 25788229 (-) True G7603
TU10312 other downstream 138420 25698261 ~ 25699557 (-) True G7589
TU10046 other downstream 1078377 24755932 ~ 24759600 (-) True LOC120543531
TU9991 other downstream 1302661 24532236 ~ 24535316 (-) True G7323
TU9658 other downstream 2057653 23774725 ~ 23780324 (-) False palm3
TU10486 other upstream 162762 26001524 ~ 26003263 (-) True G7722
TU10488 other upstream 162762 26001524 ~ 26009217 (-) False G7722
TU10489 other upstream 162762 26001524 ~ 26009217 (-) False G7722
TU10490 other upstream 162762 26001524 ~ 26009217 (-) False G7722
TU10491 other upstream 162762 26001524 ~ 26009217 (-) False G7722

Expression Profile