RNA id: TU10502


Basic Information

Item Value
RNA id TU10502
length 848
RNA type TUCP
GC content 0.36
exon number 5
gene id adamtsl7
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 26112014 ~ 26121649 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTTTGTCTTTTTTCCCCTCCCACCCCTCAAGCCAACCCCATctcacgaacacacacacacacacacacacacacacacacacacacacaaacacacagtgtgTGTCCTCCTCCCTCAGTCTCTCCATGGCTGGATTGTGGCAGCAGCTTAGCTCCCTGCAGCAGGGTCGAGCTCTGGCTCTCCTCCACCTCATCGGTCTTCTCTACTCTACCTCGGGTGCTTTTACCTGGGATACCAGCCTTCCCCCTCTGAAGGAGTTTCAGGTGGTGAGGGGGAATTTCTCTAGGACTTTCCTCCGCGTTGGCTACCATAAGATTGCAAAGATTCCTGCAGGAGCACGCAACATCAGCGTACGGGAGACAATAAAGAGCCGAAACTACcttgctctgcagaCCCAAAGTGGTGTCTCCATCATCAATGGCGACTGGATGATTAACAGGCCGGGGATCTTCCTTGCTGTTGGAACACAGCTGACGTACCAGAGACCCAATGAAATCCGCTCTCGCAACGGAGAGTCCATCACTGCACCCGGGCCCCTGACTGAGGACCTGCATGTATATTTGATTTACCAGCAACCAGGTCCCAGTGTATACTATGAATACATTGTGCCTTTTCAAAACACACCCCCCACTCCTGAGCCAGATCCACCTTCTGATAGTCTGCCACTGGTAGGCCCATCCCAATCAGGTGAGAAGGACCACAGAGGTGACGTCACAAACAACATCATCAAAGAGAAACCCCACCCTAACCAGGTTAGCTCTGACCCCAGCATGAACTCTGACCCTCGGCCCACCTACACCTGGACAAAGAGTGGGCGCACAGAGTGCAGCACGACCTGTGGCAATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10500 lncRNA downstream 7167 26021208 ~ 26110065 (-) True G7730
TU10524 lncRNA downstream 39990 26075397 ~ 26077242 (-) False polq
TU10507 lncRNA downstream 78125 26038291 ~ 26039107 (-) True G7737
TU10495 lncRNA downstream 99132 26016460 ~ 26018100 (-) True G7726
TU10388 lncRNA downstream 278470 25837977 ~ 25838762 (-) True G7647
TU10535 lncRNA upstream 14251 26135900 ~ 26136838 (-) True G7765
XR_005639393.1 lncRNA upstream 67112 26188761 ~ 26189886 (-) True LOC120559960
XR_005639395.1 lncRNA upstream 68251 26189900 ~ 26190303 (-) True LOC120559965
XR_005639396.1 lncRNA upstream 68650 26190299 ~ 26190886 (-) True LOC120559970
TU10674 lncRNA upstream 123692 26245341 ~ 26301677 (-) True G7871
XM_039803532.1 mRNA downstream 22988 26077032 ~ 26094244 (-) True polq
XM_039803558.1 mRNA downstream 22988 26077977 ~ 26094244 (-) False polq
XM_039803549.1 mRNA downstream 22988 26077977 ~ 26094244 (-) False polq
XM_039803567.1 mRNA downstream 22988 26080703 ~ 26094244 (-) False polq
XM_039803540.1 mRNA downstream 23222 26077977 ~ 26094010 (-) False polq
XM_039802012.1 mRNA upstream 31841 26153490 ~ 26236529 (-) True pax5
XM_039802022.1 mRNA upstream 31841 26153490 ~ 26236523 (-) False pax5
XM_039802024.1 mRNA upstream 31841 26153490 ~ 26236212 (-) False pax5
XM_039802023.1 mRNA upstream 31841 26153490 ~ 26229321 (-) False pax5
XM_039802020.1 mRNA upstream 35842 26157491 ~ 26236532 (-) False pax5
TU10488 other downstream 108015 26001524 ~ 26009217 (-) False G7722
TU10489 other downstream 108015 26001524 ~ 26009217 (-) False G7722
TU10490 other downstream 108015 26001524 ~ 26009217 (-) False G7722
TU10491 other downstream 108015 26001524 ~ 26009217 (-) False G7722
TU10487 other downstream 108015 26007953 ~ 26009217 (-) False G7722
unassigned_transcript_61 other upstream 290643 26412292 ~ 26412363 (-) True trnap-agg
TU10744 other upstream 412203 26533852 ~ 26535736 (-) False LOC120566984
TU10756 other upstream 445418 26567067 ~ 26578805 (-) True smim14
TU10758 other upstream 445965 26567614 ~ 26578805 (-) False smim14
TU10760 other upstream 445965 26567614 ~ 26578805 (-) False smim14

Expression Profile