RNA id: XR_005640497.1


Basic Information

Item Value
RNA id XR_005640497.1
length 493
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC120566984
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 26533833 ~ 26535736 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcctggaatGATGCCCACCCTTTTCTGTTTGTCCTCAGAAAACCTGTCTGCCAACATATCTTGTCCCACTAATTGGACTCTGCACAATTGTAGATGTTTCCACTTTGTTACAACACCATTGAGTTGGGCTCAGGCTCAGAAACACTGTCAATCCGAGGGGGGAAACCTTGCatcgatacacagtgttgaggaGGTTTTGGAGATTCATAGGATCATACAACATAACACTGAGTTGAACAATGCAGCtaatgATGGACAGTGCTGGGAAGACTCATTGTGTTACAATCTCCTCCCATCAATCTGTGCCAAACCCTCCAGTGATTGCTGAACGGACACAGAGGCATGCACTACCTTTAAACAAACACTTGGTATATGTGACAAGTGAAACTGAAGCTGAAGAAGAGGATTGAATGGTTGTTAATGAGTATCTTATTACCACTCTGAGAAAATTAGTCTTAtaatgtaaaattaaaaagcTGAAGCATTGAAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10730 lncRNA downstream 38068 26492902 ~ 26495765 (-) True G7921
TU10726 lncRNA downstream 78050 26455577 ~ 26455783 (-) True G7918
TU10725 lncRNA downstream 84847 26448607 ~ 26448986 (-) True G7917
TU10689 lncRNA downstream 122526 26307863 ~ 26411307 (-) False G7883
TU10687 lncRNA downstream 122526 26409094 ~ 26411307 (-) True G7883
TU10748 lncRNA upstream 14988 26550712 ~ 26551906 (-) True G7936
TU10776 lncRNA upstream 94057 26629781 ~ 26637840 (-) True G7948
TU10814 lncRNA upstream 147247 26682971 ~ 26690130 (-) True G7969
TU10816 lncRNA upstream 204102 26739826 ~ 26787924 (-) True G7971
TU10905 lncRNA upstream 325463 26861187 ~ 26865281 (-) True G8023
XM_039803387.1 mRNA downstream 715 26519478 ~ 26533118 (-) True rfc1
XM_039797155.1 mRNA downstream 98046 26425091 ~ 26435787 (-) True LOC120557121
XM_039797161.1 mRNA downstream 98049 26425091 ~ 26435784 (-) False LOC120557121
XM_039802020.1 mRNA downstream 297301 26157491 ~ 26236532 (-) False pax5
XM_039802022.1 mRNA downstream 297310 26153490 ~ 26236523 (-) False pax5
XM_039794491.1 mRNA upstream 3580 26539304 ~ 26546556 (-) False rpl9
XM_039794500.1 mRNA upstream 3613 26539337 ~ 26546543 (-) True rpl9
XM_039794466.1 mRNA upstream 18310 26554034 ~ 26559727 (-) True ugdh
XM_039794515.1 mRNA upstream 24662 26560386 ~ 26566438 (-) True map9
XM_039794527.1 mRNA upstream 33951 26569675 ~ 26578815 (-) False smim14
unassigned_transcript_61 other downstream 121470 26412292 ~ 26412363 (-) True trnap-agg
TU10502 other downstream 412184 26117232 ~ 26121649 (-) False adamtsl7
TU10490 other downstream 524616 26001524 ~ 26009217 (-) False G7722
TU10756 other upstream 31343 26567067 ~ 26578805 (-) True smim14
TU10758 other upstream 31890 26567614 ~ 26578805 (-) False smim14
TU10760 other upstream 31890 26567614 ~ 26578805 (-) False smim14
TU10761 other upstream 31890 26567614 ~ 26578805 (-) False smim14
TU11635 other upstream 2770297 29306021 ~ 29339824 (-) False rnf24

Expression Profile