RNA id: TU10758


Basic Information

Item Value
RNA id TU10758
length 2753
RNA type TUCP
GC content 0.40
exon number 6
gene id smim14
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 26567067 ~ 26578815 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTCGTGAAGAAGGTTGGCTCACGTTCACCAAACAAAACACAGACGGTAGGTTGACATGTCTGCAATCTAATGGTTTCTGTGGGGAACAAGTGCTGCAGCGGTGCAGCCCAGGCCCTCTAAAGACATCTAACGTTTTCTCAACATCTACACAGATCAAGGGTGGACCCCATCTGGTGAGAAATGGCAGAGGGAGGTTTTGACCCTTGTGAGTGCATCTGCACCCATGAGCATGCTATGAGGCGCCTAATCAACCTGCTCAGACAATCTCAGTCCTactgcacagacacagactgccCTCAGGAATtGCCAGGTCCCAGTGGGCCAGTCAGCGGAGGAGGTGACCTGACCCTCCCCATGGTTCTGATGGGATGGGCGGTGCTGGCTCTGCTCCTGTTCCTGTTGCGCCCATCCAGTCTCAGGGGTTCCCGTCCCACAGGCAAACCTACTGGACCCCACAATAGCGATGGAAGAGAGCCTCCAGCACCCCCTATTGACTAGCAGTGGAGAGTAGCAGCACTCACCCACCTGCTCTGACTGGAGCTGCACAGTGAAGcttgatttatacttctgcgtaaaatctacgCCGTTGCTACGTACGTAGGGACGTGTAGACACAaacctacgccggaccctacgccatagCCTGACATGTAcctcttgaaaaatgtaactatacGTCGCGACGACgtacgtcgctcggccgtggctttgtagcgttgcatttcccccgactcatttcctggttctccttctccataaacaacacgAAATcgaggagagggttaacttttcctgctacagatttcccacgtTGGTCAGAAAGcactttgtttgtttctctcactatgactctagagtcagtactcgctccgaagctaatcgccttcactctctcactttctccctcactctaccacccactccccacacacatacatgtcggctcgacacacacaccagcacactattataaacatcaggccacttaacgtaggctatggcgaaagctctgcgtggagcctccgcagaaccataaatcaagctttagaCAGTGACTGTGACCAGGACAGCGCCATCTCCCCTTCATTCAAATATCTTTTGCTTTACTCCTATTTCAATGCCATTGTGTTTTAGATCGGTCTATTATTCTTGTTTCTAGAGCTCAACTGCTACTGGAATAATGAGCCCAAtatatatatatatttattttttatttttttttatttttattttttttacataaacatTCAACATTGGGCAAGTATTGGTTATTTTTGACAAAGATAAAGATTGAGGCAGGATATTTTACAGTGAAAAAATCTGAAAAGTTTTTGGGAAATTTAATAACCATACATGGAAACACATTTTCTCCACAAATACAAAACTTGAatgaaagttataaaaaatgttgtttcGTATATCTGCAGACCTCCCATTTTGACTGATAATATTGGCCGACAGTATCAGCATGTTGATATATCGGTACGTGGTATTCACCACGTACCAAGTCTTTAATCAGAAGGCGTGGCATTGTTCTGAAACCCTGATCTGAGCTCTGGTGCTGACTGGTCGGCAGTTACATGAACCCAGAATGAAGGAATGTGTCACATGCGTTGGTGGAGAAAGGAGTATTAGTTATATTGTTGTTCGAGTGCTTGCTGAGTAATGATGAAGGGTGGCGGGTTCTTCAGACTCTCCGAAACATTCCTCTCTTTCCAAAGTTACAGCTCTAAACGGTGCCAGTAATGATGTCGTACCACATGTTTTAATAACCTATTTAAACCAGCAATGTCATTAATGAAATAAATTTAGAATTACAATAACATGGCATATTGATTTTAATGCAGTGATTTCATCTTATGTTTACATCCAGTCCTTAATTAGATTACATACTCCAGCAAATAGTCTGATTTGAACATGTCTGTCCTTTTAAGTAACTGTTGGTTACTGTAGTATAAATGATTTAAGACAGCAGTGACGGATCTTATGGGTCTGTTTTGACGCTTCAAACTTGTATCACATAGTTGAAATGAACTGAATTGCAAGCATACAGATAGGGTGTATTAAGTGTGGTCATTGTAATACAGTATACTCCGCAAGCATTTAATCATATTGAAATGATTCTGTGtactgtaattgttttgtaGTTAAAAGATAAAAATCTGAATGGTATACTCAATTTGTAGCAGATAATCATACTTTATTAGCACTTTTGTTGTGGTATGTTGTTTTCTTATGAAGGTGTGTTTTACTGATTCAGCTGTCTAAATGAGGTGGAGGTGAGGGCCTGTTCTTTTCGCAGCAGTGTGTGAATAATGGGAGCAATCTAAAGTTTCTACTTCTGCAACTTCaaaccaattaaaaggaaaggAGCAAGAAAGGGTGCATTTTCAAACAGTGCCAATGTTAATTTAAAGTTTTGGTCTCAGTGCTAATTTAGAGAACAGCTTCTTGAGAAAGAACAGCAATAGTTGAgctcatttcttttttaaatgagataagAGGACAAGGAAATTATCTTCAGTGGAAGTTTTTGTCATGTCTCATTTTCGTGGTTTACACCAGAGGTGTAATTAGTGAACAGAAAAATAGAAACCTCTAATGCAGAACATAGTGGTGAATGTATTTTGTTCCTTAACTATGTATGTAAATGTGGGTGGATatttcaacagcaccacaaactacagcctCAAAGTTATAGAAGAGAATCAACCCTTTCATACAATCTcaagaaaaatttaacattataat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10748 lncRNA downstream 15708 26550712 ~ 26551906 (-) True G7936
XR_005640497.1 lncRNA downstream 31890 26533833 ~ 26535724 (-) False LOC120566984
XR_005640498.1 lncRNA downstream 31890 26533833 ~ 26535724 (-) True LOC120566984
TU10730 lncRNA downstream 71849 26492902 ~ 26495765 (-) True G7921
TU10726 lncRNA downstream 111831 26455577 ~ 26455783 (-) True G7918
TU10776 lncRNA upstream 50976 26629781 ~ 26637840 (-) True G7948
TU10814 lncRNA upstream 104166 26682971 ~ 26690130 (-) True G7969
TU10816 lncRNA upstream 161021 26739826 ~ 26787924 (-) True G7971
TU10905 lncRNA upstream 282382 26861187 ~ 26865281 (-) True G8023
TU10906 lncRNA upstream 288620 26867425 ~ 26873605 (-) True G8024
XM_039794515.1 mRNA downstream 1176 26560386 ~ 26566438 (-) True map9
XM_039794466.1 mRNA downstream 7887 26554034 ~ 26559727 (-) True ugdh
XM_039794491.1 mRNA downstream 21058 26539304 ~ 26546556 (-) False rpl9
XM_039794500.1 mRNA downstream 21071 26539337 ~ 26546543 (-) True rpl9
XM_039803387.1 mRNA downstream 34496 26519478 ~ 26533118 (-) True rfc1
XM_039794582.1 mRNA upstream 7704 26586509 ~ 26620024 (-) True pds5a
XM_039794591.1 mRNA upstream 7704 26586509 ~ 26620021 (-) False pds5a
XM_039794562.1 mRNA upstream 8814 26587619 ~ 26619746 (-) False pds5a
XM_039794572.1 mRNA upstream 8814 26587619 ~ 26619350 (-) False pds5a
XM_039796414.1 mRNA upstream 114540 26693345 ~ 26780248 (-) False slit2
TU10744 other downstream 31878 26533852 ~ 26535736 (-) False LOC120566984
unassigned_transcript_61 other downstream 155251 26412292 ~ 26412363 (-) True trnap-agg
TU10502 other downstream 445965 26117232 ~ 26121649 (-) False adamtsl7
TU10491 other downstream 558397 26001524 ~ 26009217 (-) False G7722
TU11635 other upstream 2727216 29306021 ~ 29339824 (-) False rnf24
TU11633 other upstream 2727243 29306048 ~ 29339824 (-) True rnf24
TU11778 other upstream 3010503 29589308 ~ 29593623 (-) True G8701
TU12128 other upstream 4392583 30971388 ~ 30974612 (-) True G8975
TU12451 other upstream 5360916 31939721 ~ 31948554 (-) False znf827

Expression Profile