RNA id: XM_039794527.1



Basic Information


Item Value
RNA id XM_039794527.1
length 827
RNA type mRNA
GC content 0.53
exon number 6
gene id smim14
representative False

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 26567067 ~ 26578815 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


tCCCGGATGTCTGTCGTGAAGAAGGTTGGCTCACGTTCACCAAACAAAACACAGACGGTAGGTTGACATGTCTGCAATCTAATGGTTTCTGTGGGGAACAAGTGCTGCAGCGGTGCAGCCCAGGCCCTCTAAAGACATCTAACGTTTTCTCAACATCTACACAGATCAAGGGTGGACCCCATCTGGTGAGAAATGGCAGAGGGAGGTTTTGACCCTTGTGAGTGCATCTGCACCCATGAGCATGCTATGAGGCGCCTAATCAACCTGCTCAGACAATCTCAGTCCTactgcacagacacagactgccCTCAGGAATtGCCAGGTCCCAGTGGGCCAGTCAGCGGAGGAGGTGACCTGACCCTCCCCATGGTTCTGATGGGATGGGCGGTGCTGGCTCTGCTCCTGTTCCTGTTGCGCCCATCCAGTCTCAGGGGTTCCCGTCCCACAGGCAAACCTACTGGACCCCACAATCCAAGACACAGCAAGCAACAGTCTAACCAAATGCAGAAGTCATTCATACTGTTGCTATGTTTGAGTTGTTAgAGCGATGGAAGAGAGCCTCCAGCACCCCCTATTGACTAGCAGTGGAGAGTAGCAGCACTCACCCACCTGCTCTGACTGGAGCTGCACAGTGAAGcttgatttatacttctgcgtaaaatctacgCCGTTGCTACGTACGTAGGGACGTGTAGACACAaacctacgccggaccctacgccatagCCTGACATGTAcctcttgaaaaatgtaactatacGTCGCGACGACgtacgtcgctcggccgtggctttgtagcgttgcatttcccccgactcatttcctgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU10748 lncRNA downstream 17769 26550712 ~ 26551906 (-) True G7936
XR_005640497.1 lncRNA downstream 33951 26533833 ~ 26535724 (-) False LOC120566984
XR_005640498.1 lncRNA downstream 33951 26533833 ~ 26535724 (-) True LOC120566984
TU10730 lncRNA downstream 73910 26492902 ~ 26495765 (-) True G7921
TU10726 lncRNA downstream 113892 26455577 ~ 26455783 (-) True G7918
TU10776 lncRNA upstream 50966 26629781 ~ 26637840 (-) True G7948
TU10814 lncRNA upstream 104156 26682971 ~ 26690130 (-) True G7969
TU10816 lncRNA upstream 161011 26739826 ~ 26787924 (-) True G7971
TU10905 lncRNA upstream 282372 26861187 ~ 26865281 (-) True G8023
TU10906 lncRNA upstream 288610 26867425 ~ 26873605 (-) True G8024
XM_039794515.1 mRNA downstream 3237 26560386 ~ 26566438 (-) True map9
XM_039794466.1 mRNA downstream 9948 26554034 ~ 26559727 (-) True ugdh
XM_039794491.1 mRNA downstream 23119 26539304 ~ 26546556 (-) False rpl9
XM_039794500.1 mRNA downstream 23132 26539337 ~ 26546543 (-) True rpl9
XM_039803387.1 mRNA downstream 36557 26519478 ~ 26533118 (-) True rfc1
XM_039794582.1 mRNA upstream 7694 26586509 ~ 26620024 (-) True pds5a
XM_039794591.1 mRNA upstream 7694 26586509 ~ 26620021 (-) False pds5a
XM_039794562.1 mRNA upstream 8804 26587619 ~ 26619746 (-) False pds5a
XM_039794572.1 mRNA upstream 8804 26587619 ~ 26619350 (-) False pds5a
XM_039796414.1 mRNA upstream 114530 26693345 ~ 26780248 (-) False slit2
TU10744 other downstream 33939 26533852 ~ 26535736 (-) False LOC120566984
unassigned_transcript_61 other downstream 157312 26412292 ~ 26412363 (-) True trnap-agg
TU10502 other downstream 448026 26117232 ~ 26121649 (-) False adamtsl7
TU10491 other downstream 560458 26001524 ~ 26009217 (-) False G7722
TU11635 other upstream 2727206 29306021 ~ 29339824 (-) False rnf24
TU11633 other upstream 2727233 29306048 ~ 29339824 (-) True rnf24
TU11778 other upstream 3010493 29589308 ~ 29593623 (-) True G8701
TU12128 other upstream 4392573 30971388 ~ 30974612 (-) True G8975
TU12451 other upstream 5360906 31939721 ~ 31948554 (-) False znf827

Expression Profile