RNA id: TU10776


Basic Information

Item Value
RNA id TU10776
length 1508
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G7948
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 26629781 ~ 26637840 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTAAAACGATTTgaacaaatgaataaaaaaatacaattttctaTTTATAATTCATGTGTTCACAAGATTATGTACAATCAGTAAAATCTGTCAACACTGTTGTTGCACTTTTATGAAAAATATCACACAGATAGAAAAACAGAAGCCATTTTAAACCTACAATACTAGTGTAACAACCTGAGGAATACTACTGCTACTAAATTTGGCACAATAGGTTAAAAAAAGGCTTGAAATAACTGACTGGCCTCGAAAGACAAAACCTCACAATGGTGATTATTTTCCTGAGTCTGAATATCAATATTTTAGCAGCCAAGCTTGGCTTGGCCTTAAGTAAATGAAGAGTTGCAGTATGTTGCTGAGGCAGCTGCTACGACAAAGGAGACCGATTGCTGCAGAACTCACAGAAGAGGTTGTTAAACCCATTTTTGGCCTTTTGATCATCTGAAGAGTTTCAGGCTCACCTCCTGGTGAACAAGACACACTGCAACACTACAaccaagtagggctgggcaatacatcgatatcgatatatgaggctagatttcgtcttaaattttagatatcgtaatatcctgatatgacaaaagtgttgtctttttctggttttaaaggctgcattacagtagagtgatgtcattttccaaacacaccagactgttctagctgttctattatttgcctttacccatagttattatatcaacattactgatgattatttatcaaaaatctcattgtgtgcatattttgtgaaagcaccaattgtcaaccctacaatattgccacaatatcgatatcgaggtatttggtcaaaaatattgggaTATTTGATATACAACCAAGACAAAAAAACTCTCTTCCAtctcagcatttagttttgtggTAAATTCTCAGACTACTATGTATTAAATCTAGAATTGGTGTCAAATGCTTAAATTGTGTCTCAAAAAAGGATGTCGTAGTACTTTAATTCCTAGAGAGCAACCTCCAAGCAGACAATGTGCAATCATGATTCAATTAAAGATTCATAAAATCCTCACGTCTCAAACGTGAGTCCAGATTAGTAAATGTAAGAATGATTAAATAACGCCTTATTCAACATGACGTCTTCAAAACACAGGGATTTGTCACACTCTTTAAAAGGAATAACGATAAATGTAAAGCAAAAAACAATCacattataaaacatttttacatttaaaatgtacatacATTCTAGCTTTACAGCTGTGTGAAATTACCTTATTTACGTTTCACTTTATTTACCAtaatcacaaaagaaaaaatagtCTTATTAAGATctaaattacaattatgaattTAAAATGAACCTCAATTTAACCTAGATTAAGATTATGATTAATTtaagagagatagatagagacagGATGAGTGGGGAAAACTGTAGTAATTGTAAATGTGGCATTGTATAAGTagtgagagagacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgcgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10748 lncRNA downstream 77875 26550712 ~ 26551906 (-) True G7936
XR_005640497.1 lncRNA downstream 94057 26533833 ~ 26535724 (-) False LOC120566984
XR_005640498.1 lncRNA downstream 94057 26533833 ~ 26535724 (-) True LOC120566984
TU10730 lncRNA downstream 134016 26492902 ~ 26495765 (-) True G7921
TU10726 lncRNA downstream 173998 26455577 ~ 26455783 (-) True G7918
TU10814 lncRNA upstream 45131 26682971 ~ 26690130 (-) True G7969
TU10816 lncRNA upstream 101986 26739826 ~ 26787924 (-) True G7971
TU10905 lncRNA upstream 223347 26861187 ~ 26865281 (-) True G8023
TU10906 lncRNA upstream 229585 26867425 ~ 26873605 (-) True G8024
TU10911 lncRNA upstream 258577 26896417 ~ 26914727 (-) True G8027
XM_039794582.1 mRNA downstream 9757 26586509 ~ 26620024 (-) True pds5a
XM_039794591.1 mRNA downstream 9760 26586509 ~ 26620021 (-) False pds5a
XM_039794562.1 mRNA downstream 10035 26587619 ~ 26619746 (-) False pds5a
XM_039794572.1 mRNA downstream 10431 26587619 ~ 26619350 (-) False pds5a
XM_039794527.1 mRNA downstream 50966 26569675 ~ 26578815 (-) False smim14
XM_039796414.1 mRNA upstream 55505 26693345 ~ 26780248 (-) False slit2
XM_039796378.1 mRNA upstream 55505 26693345 ~ 26780248 (-) False slit2
XM_039796394.1 mRNA upstream 55505 26693345 ~ 26780248 (-) False slit2
XM_039796387.1 mRNA upstream 55505 26693345 ~ 26780248 (-) False slit2
XM_039796403.1 mRNA upstream 55505 26693345 ~ 26780248 (-) False slit2
TU10756 other downstream 50976 26567067 ~ 26578805 (-) True smim14
TU10758 other downstream 50976 26567614 ~ 26578805 (-) False smim14
TU10760 other downstream 50976 26567614 ~ 26578805 (-) False smim14
TU10761 other downstream 50976 26567614 ~ 26578805 (-) False smim14
TU10744 other downstream 94045 26533852 ~ 26535736 (-) False LOC120566984
TU11635 other upstream 2668181 29306021 ~ 29339824 (-) False rnf24
TU11633 other upstream 2668208 29306048 ~ 29339824 (-) True rnf24
TU11778 other upstream 2951468 29589308 ~ 29593623 (-) True G8701
TU12128 other upstream 4333548 30971388 ~ 30974612 (-) True G8975
TU12451 other upstream 5301881 31939721 ~ 31948554 (-) False znf827

Expression Profile