RNA id: TU10906


Basic Information

Item Value
RNA id TU10906
length 6160
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G8024
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 26867425 ~ 26873605 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTTATTGTTTCAATTACAGACACCTCTTCTTGCATCTGTAATGGACAGTATAAAAACatgataaagaaaaagaaatatacaACAGGTCGGTTTAGCACCAGGTTTTTCAACAGAGCGCTGATCACAAGACTGGGCCACCCCACAACACTCGTATTAAAACGACAACCATAGTGACATACATACAAGGGTAGTCGGACACATAATACACACTACAGGTTTAGGTTTTGACCTACAGCCAGACATCTTGGATCTACCTGCCCCTTTTAACATGATACTGATCCAAGGTTAGTGTTAACCAATCACCTCTGTCCTTATCTATCACACGCCTGATAAGCCAAAGAGCAGTAGGCCTAGCTGAGCCCCCGTGGAGGTAGGCGTCTCttgctgcaaaaaaaataaaataagaaacttAACAGCAACACATTTCCCACCTGCATTTCAATTGCAAATAATGCTAGtacatttgtggaaaaaaaactatttaatgCTATCATAACTAGGATCTGTTTCTTCTGCTTCACTGAGGGAAACGAAGCAGgttaggggaaaaaaaaaaaaaaaaaagtttctattACGATATCGTTTAAAATCACTTTACATGGCTACGGAAACAACTTCCCAGGCCATTGGTACTTGTGTACATCCATTCGTCTGTCAGCAATAAAATATTTACTACATACTGATAAATCATCTGGGTTTGTATTGCACCAAATAGATTCTCTAGTTTTACAGTAAGGGTTGGTAGTGGGACACAGAATGTGCAAAAGATGGGGGGAGGAATCTGTGTAGTGGGAATAATAATCTCAGATGGGATAGTGCAAGAAGTAGATCCAACACCAACAGAGTATCTGTTTtgggtgaagaagaaaaaaaaaaaaaaatctaagatAAGTGAATTAAAACCAGACAGAGCCCACAAACCAACAAATGAATCAGAATCTACTTTCTATAACTGCATAATGTCATTTTCTTCATCACTTCACACATACTCATTTAGAACATGTGGGTTAATTGCAGTTTAGTGCCAAGACTCGCAGATATCGTTAATACTTTGAAAGAAATAATGACAAACTATTTGGTTTAAGTACAGGCGGATGGCCAATTACTGTAGTTCAATACACAATTTTATAGGTGGGGCCCATACACAGATAGTGTTCAGGGTACAAATGGGACTCAGTTGATATTTAAGAGTCCTTCCTTCATTCACACCATGTTTTTGGCTACTGGCTTGCAATACAACAGTGACTAAAGCATCAAAGAAAAATATTGCAAAGAAGGCTCGGATTTAGAGAATGTCATTCAATTTCAATATACTTTtgtcaaaactaaaaaaaacaaaaaaaacttaaattagcAATTTGGAATTTAAACAGTGCCAAAGTAAGGGTGACtatacatttaaattaatttggGGGGATTTTAGGGCTGTACATTCTTGTGGTTTCAGGTTAAGATTTACAATAAAAGGTCATTGTCTGAAATAAGTGGTGGCCTTGATAATGAGGTATGTTAAGGGGAGATGGCACTGTCTGTATAGAGTCACACTTTGCCTTTCCTTCCAATACAGCCACACTGACAGGGCTCACTGTATAAGTACTTATCCTGATAAAACtttgtttaatgtaatgattTGATCTACTTACGCGTTCAGAAAGACAAaggcaattaaaaaaacaaaacaaaaaaaaacatttctgtacATACATATCCATGGATAAAAATAGTGCAACATCAAGCTTTTGTTAAGTTAGACTGCTACATAATTGCTGAGTGTAAGACTGAACCATAGTGAGATGGTCAGTCCACGTGGTCAGCTCAATGTCCAAAGGCACCACGTTAAACCACAGTCCCTTTCCCAGGTAGGAGGAGGCTTCATGCTTCATTTAGTtttctgaaagaaaaagaaCGAGAGCGCGAATTAATTTTGTGGCGATTTGAAATTGAACTTTAATAAAAGTTGATATTCACTAAAAGAAGCGAGGTAGTTACCTAACACAAAGTCGCACCATCTTGGCCCGGTTAGGCCCCTCATTCGCGATTGTCTCAACATCTTTGCTGGTGGTGGTTGTGGTGGTTCAGTAGACACAACCCCAGGACTTTTATATTTGCCTTTCTGCCTCCCCACTGACATCTCATCCTGCTCCTGGACTGATTTAGGTGCAGAACTTGCTAGCTCTCTTGAGGTTGTGctcatttttctttcagttttcaCAGCTTTAACAACTCCTACCagttctctctcccttcctgcAAAGAGGTATGCAGAAGGTGACCCATCATCCAGTGTCACAGTACAGGAGTCCCACTCTTCCTCAGTTGATTCATTGTCCGGAGAGTTGATCTTTCTCAGAAACACCCGACATTCCTTCAGTGTCTCAGGACTCCAGGCTTTACAGTAGAGGTTCTGCTCTGTTTGTACATCCACAGGCTCCTGAGTTTGGTCAACAGAACTGGTGGCAGAACTGTTCTCCATACGGTCAGATAACAGATCTTTTGCTGATCTGCGTAATGCTTTACGTTTTGGTTGCAGTCCAGTCACTACATGTTCCTTTGAACAACGTGTAGctacttttatgtttttcttattCCTCTGCCTCTTTCGCAAACTCTCCCTTTCTTTCCAGGTTAGGAACCTTGTCCTTGCTCTAAATAGAGTGGTCCGGTATTTGTCAAATGCTCTGCTTCGCCACCATTGGGCTCCTTGATTGAGTCTGCTTGCTGCAAACCTGGGAGTGAAAAGTTGACGCCTAATCTTATGTATCGATAAAAGTGCCTCATTTTTCTTCCTCAACCTTCTTTGAGCCCGTTGATGTTGCAGAGGACTTTTTGGCACCGTTTTGGCAAATTTCTTGATGTGTTTGCGGAGTCGCTCTGCCTGAGGACTGTGGCAAACCCTTGTTTTAATGGCAGAACGAGGGAAGTGCATAACTTCGTAAGGATTACGGGAGCTTGCCTTCTTGACAATAGCCagagactgtgtctctgtggtctGCATAAACCAGGAGCAGAGCTGTGGCATGCTACAGGACCTTGGTTTGTTAAGAGGACAGTCGAACAGCGTCCGTACCACAGAGGAATGTTTTGAATTCCTGGTAAATGAACTGTTGCCGTCAGTGCCTGTCTTTGAATTGAAGGCAGTTTCTTTTTCTTGGTTCTCCACAGTGTTTGAGACCCAAGTGTCAGAGATAAGTCGTATTCGCCTGGCAAGCTCCTGGTTCATAGTATTTTCCTCAGCTGATGCTGCCCACCACCTTAGCGTCTCTTTTGGGGTAAATATTGAGTCTATAGACACCTCTGCCACTCTGCTCAGGTCCTGAGAGATGTTCTTACTCTCTTGCCCACGGAGCAGTCTTTTCTCCCTTGAAGTCTCTAAACTACTCTTTTGCTCCCCCTGTCTCCTTTCATTGCTAGCCTTGTTCAGCAGAAGTTGTTTGGAGCGCCGTAGCAGGGCATTACTGTGGCTGTATGATCTAGAGGTGGAGGTGGCAACAGCGTGCAGTAAGTGGATCGATGGCTTTCTCACTCTCATTGAGTGACGCACTGCTACAGGCTGGTTTGGCAGTTTGCCTTTACTTTCACCCTCTGTTTCTATGCCTTCTTCTGTTTGACTGCTTTTGCTTGTTGACTGACGACTGATTGTCCAGGGCTCTTTGGCAGATTTGAATTCCGGTAGGACTACTTTCTTATGAATTAGTGTTTCAGGAGACCGTCTAATATCCTTATTTATCTGAATTTTACGCTGCCTAGGTGACACTGTGGTTACTGTGACTGAGATTCCAGAGATTTTAACTTTTGCAGGTCTACCTGGTTTCCTTGAGGGTGCAGAATCATCCCTCTTCTGACATTTGATGTTACTGCTAGATTGAGGGGCAGACTCTTTTACAGGACTGACAAAATGTAATTCTTCAGACAATTCTGTTGAGGCTGTTTTGATACTACCTGAGCTGGTCTTAGGGTTGTGCATTAAAATGCCCAAGTCACTTTTAAGGCCTACTGCTTGACAAGCATCATGGAACTCCGTTTGCAGCTGGTCAAAGCCCTCAGACACCATTCGTTTGTTTCTCCTAGAACGGCCATACACTACGGTTATTTTAAGGTTCCTGTTTACATTATCCTTAACCTCAGATGCTATAACAGATTTTccatttacagtttttgcccCCATTACTGAATCCAAAGCCTTCTCCTTGCGTGGTCGACCAATTGGCCTCTTTGCCTTTTGCTCAAGCTGTGGTCCCAGCTTCTTCGGCCGGCCCGGACGCCTTTTTGGAGTGGTTTCTTGGTAAGATACTGAGTCACCTAATGATTTCTGGCTCTCAGCTCCACGCTTAGTTGGAGTACCTTCACCTGATCTTCTGGAACCTATTTTAGGTGATGATGAAGCTGACTTGGCTGGGGAAGAGGCTGACTTGGCTGGGGAAGAGGCTGACTTGGGTGATGACGAAGGAGACTTGGTTGGTGAAGAAGCAGACTTGGCTGATGAAAAGGCAGACTTGGGTGATGACGAAGCAGACTTGGTTGGTGAAAAGGCTGACTTGGGTGATGACGAAGCAGACTTGGGTGATGACGAAGCAGACTTGGGTGATGACGAAGCAGACTTGGTTGGTGACGAAGCAGACTTGGTTGGTGACGAAGCAGACTTGGTTGGTGACGAAGCTGACTTGGGTGATGACGAAGCAGACTTGGGTGATGACGAAGCAGACTTGGGTGGTGAAGAAGCAGATCTTGCAGGTGAGGTAGCAGACTTTAGTGGTGAGGAAAAAGATTTTAATTGTGAAGTAGCAGACTTAGTTCTCTGGCTTTTGGGTTTCTTAAGTGTCCCTGACCATGAAGACTCTACACACGGGTCAAAGGGTTCCTGTGCACTCGAACCAGAAGATGCTGATTTGAGACTATATCTGACCCCTTCCTTATCCTTTACTGGTGATACAAACATGAGCTTTATTGGACTAATGTACTGGACTTGGGAGTTGGGAGGGCTCTCAACACAGGTAGCAGACTTCATGGTGACATCCATTTTTGATGGGTTTTGGGGATTTCTTGAAGCTGTCTTTGAGTCCAGTAGTCTTTTTGGAGATGACCGTAGCCTTCCAAAAGGCTTGGCAGCACAGTCGCTGACATCTGTCCTATTGTCAGGGCTCTGTTTTGTAGGACTCTTCTCTTTATCAGCCAAAGTTTGCGGAAAGACCTTGTTTGTAGAAAGACCTTTTGACTCTGTGTAGGATGGTCCAGATTGTTCTTTATGTGTTGATTCAAAGGAAAACTTCAATGTGTGCTCAGGTGAGGACCTTGATTCAAGCTTGGTGTCCTCAGCATCTGGATCTTTGGATAAGGCATCTAGGGTGCTAGATGTCAAAACCTTGTGCTTTTGTGTTCCCCGGATGCTTTCAGAGAAACATTCAACGTAGAACCTGGGCTCTGTCACATAGGAGGAGAACCACTGTGGCGGTACTATACTTCTCCGGGATCTCCTTGCATCCTTAGAGTGGTGTGATTGACATTTCTTCCTATCTCTAATAGGACTACAGCAATATTTACCTTTACCTGGTCTATTGTCAGAGCTTTGACCCGATGGGGCTTCTTCCAGGTTCCTATCACTTCCAGCACAACTACCATCTTCTTTACGGGGACTGCTACACCGTTTTGTTGAGGTTGCAGTCACTGTCATCACCTGTGTTTGTACACTGTCACCCTTTGAGCCTTGTTTGCCATACTTGCTCTGCAGCTCAGGGGTCGGTATTTGAGTGCTTGCAAGGGTAAGATCCTTTTCCTCACTGGATATTTCCCTTTCCTTCTCCTCTGCTTTAATGATCTGAACTTCTTCTGTTACTACAACTGTCTGTATCTCCTCTTTTACCTCATCCCTGTTACTTTCTGCAGTGAGAATGTTCAGTGGTCCCTCCCTAACTCTATGATTCTCTACAGAGTCAACACCTACCTCCATTTCTCTTTTAGACTCCCCTTTAACTAGGTTTGAATCTGATGAAGTGGGTGATGTAGAAACAGTAACATTTCCATCTTTCAATCTTGCCCTCTTCGCTAGTGGTACCTTTCTTCTACTGTAGGACTGGTCAAACATGGCAAGCTCCCGTTTAATTTGTAAGGTTTGCCTTCTGGTTGAAGCATCATCAGCAGGTGTTGCTATAGCAGTAAGGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10905 lncRNA downstream 2144 26861187 ~ 26865281 (-) True G8023
TU10816 lncRNA downstream 79501 26739826 ~ 26787924 (-) True G7971
TU10814 lncRNA downstream 177295 26682971 ~ 26690130 (-) True G7969
TU10776 lncRNA downstream 229585 26629781 ~ 26637840 (-) True G7948
TU10748 lncRNA downstream 315519 26550712 ~ 26551906 (-) True G7936
TU10911 lncRNA upstream 22812 26896417 ~ 26914727 (-) True G8027
XR_005640036.1 lncRNA upstream 51561 26925166 ~ 26925792 (-) True LOC120563938
TU10922 lncRNA upstream 86818 26960423 ~ 26960916 (-) True G8037
TU10971 lncRNA upstream 217864 27091469 ~ 27091754 (-) True G8081
TU10983 lncRNA upstream 306429 27180034 ~ 27183685 (-) True G8087
XM_039796488.1 mRNA downstream 87177 26694993 ~ 26780248 (-) False slit2
XM_039796438.1 mRNA downstream 87178 26693345 ~ 26780247 (-) False slit2
XM_039816225.1 mRNA upstream 1108 26874713 ~ 26889605 (-) False ncapg
XM_039816240.1 mRNA upstream 1108 26874713 ~ 26889592 (-) False ncapg
XM_039816230.1 mRNA upstream 1108 26874713 ~ 26889509 (-) True ncapg
XM_039808394.1 mRNA upstream 42777 26916382 ~ 26931485 (-) True haspin
XM_039807040.1 mRNA upstream 122556 26996161 ~ 27012421 (-) True LOC120563023
TU10756 other downstream 288620 26567067 ~ 26578805 (-) True smim14
TU10758 other downstream 288620 26567614 ~ 26578805 (-) False smim14
TU10760 other downstream 288620 26567614 ~ 26578805 (-) False smim14
TU10761 other downstream 288620 26567614 ~ 26578805 (-) False smim14
TU10744 other downstream 331689 26533852 ~ 26535736 (-) False LOC120566984
TU11635 other upstream 2432416 29306021 ~ 29339824 (-) False rnf24
TU11633 other upstream 2432443 29306048 ~ 29339824 (-) True rnf24
TU11778 other upstream 2715703 29589308 ~ 29593623 (-) True G8701
TU12128 other upstream 4097783 30971388 ~ 30974612 (-) True G8975
TU12451 other upstream 5066116 31939721 ~ 31948554 (-) False znf827

Expression Profile