RNA id: TU11633


Basic Information

Item Value
RNA id TU11633
length 4998
RNA type TUCP
GC content 0.41
exon number 6
gene id rnf24
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 29306021 ~ 29339847 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAATAATACATCCGTGCATTACCCCCATCGGTCTGTATGAGTCTCTATATGCTGAGCTGACTGGGAGGAGGTGGGATCTAGCTACTGGTGGAAGTGGGCTTAACGTATACGTTACGTGCGAGTCGTGCAGATTGCAAACCACGAATATAATTGCTGCCAACGACGGATTCTTTCGGGGGAAATCACTACGAGAAAGCCCCTCGCGGGATAACCTCCCCTCCCTGCCAGCAACATACATCCATCCACCACTTTCCTTTATTTATCGTCATTTTTCTTTTGCCTCTGCTTCCCACTCAGACCCAGCGAGGTTCTCGTTAACCACAGCCGCCACCGTCGTCCACATCACAGGCGGGGGCTGTGTGATGAGGTCGCCCTGCAGCAGGGGTTTGGTTACGCTAAGATTTTGTTGTTAGGACACTCTTCGCTTTCAGTTCGGGTCAACTTGTCGGCTTTTAAAGCCTCCTAGCACCCCGAGTGTGTGAAGAAATACACAACAGACGCTACTACTGGGGCTGTGGGAACCGCTGAATATCCATGAGCTCCGATTTCCCTCACTACAGTTTCAGGATGCCAAATATAGGGTTCCAGAATCTTCCCCTTAATATCTACATTGTGGTGTTTGGGACAGCCATCTTTGTCTTCATCCTCAGCCTCCTCTTCTGCTGCTACTTAATAAGGTTACGGCACCAGGCGCACAAAGAGCTATATGCATACAAACAAGTCATTCAGAAGGAAAAAGTCAAAGAGCTAAATTTGCATGAGATTTGTGCGGTGTGCTTGGAGGAGTTCAAACAGAAAGATGAGCTGGGGATTTGTCCGTGCAAACATGCTTTTCATAGGAAGTGCCTCATTAAGTGGTTGGAGGTGAGGAAAGTCTGCCCGCTCTGCAACATGCCCGTCTTGCAGCTCGCCCAGCAGGCCGGCAGCACGGACCCCCCCGTGCCAATACAGCAGCCTCTACCCGGCATCGAGAACCTGGTGTAGAAGAGCCAACCCCTCTCTTTTAGTacactacagacacacaaacacacatcccgTCACTCATACTCTCACCTGTACAGCTACACCTTTGGTATGAGTCTGTGGATAAACTGGAGTTCATGCGCAGATACTCATAAAAAACTGTGACTGTGCAGCCATCGTCACCTCTCGTATTCTTGCATTGGTTCACAAAAAAGGTTTCCTGATATCAGTTCTAACTGATAATCAActgttttcatgtttgtttgtttttttcttttttcatggaCAATGAAGAAGAGTTGATTTAGGAGAAGTTTCCTTCTTGGCCGAGATGTGGTCGATAACTTTTTCTCAACCAATGCACTTTTCTGGGGACACCAGCTAAAGACCAGGAGGGGAAACAAAAAAGCCAAGAACTACAATAcactaaaatatacattttctttattttttttaacaagcacTTTACGAGAAGGCAAAACTTTAATTGCTTGTGATCCTAGTAGCAAggttatgttttatattttatcatTAACTATTATTTCTATGTACTTTTCCAGCCACAtaggtttttattttgaattagtAAACttgatttttaaaacaaaaaaataaatcttaaagGGACAACAAAACCTATGTCGGTAGAGAGATGTCAGGAAATTTGGACAATGCTTCTAGTTTTAATTAAACACACTCAAGAAATTAAGCTCAAAGCAACCTTGAGACTTTATGTCTGACTAAATGTGAAGGGTTTGAATGTGTTGAGTTTTTCACACTAAGCCTATAGAATTTGTTCCCTCatcacctgtttttttttcttttcattcatcACAATGTGACTGTTGTTATTATTCTATTTTCATTATTCTGTCTATACAGGAAGGTGATACAGTGAACAAATTATATTTTCACTAAACAAATTTCCCGGGTAACATCCCCCATATACGAGCGCAGACTATATGCTGTCACCCGAGGCATTactcagaaaaaaaactattcagGACCCATCCAACAGATAATTTCAAAGTAACTTCTTCAACTACTGTGATTATCTAAACCAGTATTAGTGTGTAACACCTGGTgctttatctttaaaaaaaaaacattttacagaagAAACTCCAGTAATGAGGCAATATTAAACAAAGATCTATAACATGTAACAAAAATGTTCCAGTTTTATTTTGCTCTGCTGctgcatcattttattttattgaagctGAGCTGTGTGGATGTTACAGTGGCTTTGCTTCACATTAaggagacacaaaacaaaatgtcaaaacagtCCTGTTGATTTATCTTTATCTAGCATTACATATCCTGCTAGAAAACCATCGATAATTCAATTTAGGAAGAGACCAGGATGAAGTAGACTTTTGCCTCCTTCACTGTTATGCTCCTAACTAAAAATGTGCTGCATACACAGTTGCAGTTATTTTTGCTTTTGGCCCAATAGagtgtttgtatttatttttgtatttattatactTTCTTGGTACAGCTGCATTAGGTGAATGAGTTAGCAGAATCATCAGAATCGGCACATCTTTTGGTCAAGATACACACTACTTtgtaaaacacatgcacacagggaGGGGCCATGCCACCTGGGCTGCCAGAGAGTCAGTGGTCAGCAAGTTGTAATGAAGCAGCATTTtcattcatgcacacacatacatgcataaagGGCAGTTCTGCTTTTTGCCTGCAGTATTCTGGTGCTTTCgcccctctccctctttctgtaCGGTACAGAGGGCTGTTTGTTTTGTgccacacatacagtaactcTGAGCCTGGCCAGCTTTTGTGGTTATGTTTTTTGTCCTCATCCCTTGTTAGCTGCATCTGGTAAATGGGTTGTGGGTAATTGTGCTGATCTAAATGGGTGGCTTAACAAAGAAAAAGCTGTGCGTCAGAGTGATGAACCTAAGATAAATTGGAGATTTTGTGATATGTATTGCCAATTGTCATACATTCTTATTATAGGcacaatgtaaacaaaagagTAGtcccactgtaaaaaaaaaaaaactaacacaaTGAATACATTAgacaacatttagatttaattttACAATGTGTTCTGGTGCTGTAAAAGGTGTGTTTACATGTTTGATGTTTACAAATATTactgatggaaaaaaaataactaaacagGCTTATATtttcaattctgattggtttagaaCCAACAATTTTCATCTTACTTAAATATCTTTGTGTATatacttaaaattaaacatattAATTGTGCCTTTAATAACACAAAATTCCCAATTAGACTTTATTCTCTAACACCAAACACTCTCAAGGACAGAGTAACACATGGATGGTTTTACAAAGTGACCATGCGTTTCACCTTCTATGGCAGATGCGCTTTGTTACTCTGTGGTTTGAATGTTTCATCTCTGCTGAATGTCTGCCCACACCCCACAGTGATGACCTTTTTGGTTGGGTCAGAGCGTGCAGCAAGGTGAGAATGTCAGCAGAGCTCAATCAGGATTTCTCTATCCTGTATGTAGCGTATTAGTCTGTTGTTCCGTGCACTTATCCAGGTCCAATCCTCTGACATTAATGCAGCACTATGCCACCACTGATGAGAAGCTATTTTAGAGCAActtcaaagaaaaatattatcCACATTAGCCTTATTTGAACAAAAAACTGCcacaatttcaaaataaaaggccaGGGCTGTTTTTAATTGACCTTATCCCAACCCTTTTCACTCTACAGTAAATTAACAATTAACTTTGTGATcagaaaatcatttttattgcCTGTTAAAGAAGAGGTTGTGGCTTTATGTTGAAGAAAATCAGTAACCTAAGCTTCATTATGGTGTGTGATGTACAGTATTTCGTACCTTTTTGCTTCTAAGTCTTTGGTTGAACTTATATCTCACTGCAAATTTTACAATATGAGAACCAACATTCTCCTTCATACCATTATTACCAAAAACCATACATGGGCAAGTATGTCTGCCACTGTCCCTAAAAGACAACCTATTTTGTAGCTCAGTGCTAATAACGCAAGTCTTAAAGCTTTGTCTTGGAATGTAGGTTcacaagagagagacaagaaTAGGAGGAGATGTAATTTGAAAGCATGCCTTTTTGCATAGTCCAGTTGCCACTGATATCACCATTGTTAAATGTATGTAGACCATAGTATCAGTAGTAGTGTATTTATACATAGGGTGCACAACAAAAGGCCCCTTCATATAAACTAAATGGCAGCTGAACACTTCCTGCCATTTGGCCATCTTAAGTGTTTGATTGTAAACACTTTTAGCCTTTCCACCTGAACTTCCCCGTTTCCTCCCTGTGTGCCGTCCTAATCCCACTGAAAACAAAGTGCCAACCCAAAATTAACTGTTATAAATCAAAGTCCCAGCCAATAAGAAAGAATGTTGTAAATGTAAACAGGATAGGGGAAGAGTCTCTGTCATATTATGGCCAAAAAAGAATGGAAACTGAGCCAGCCATAGTAATAAATGGCTTCCCGCCACTGAAATCACTATTGATGTCCGTGCTGCTTCTGAGAGAATTCTAATTATCAATAGACAAGACACAATCAGATGAAATACGACCGTCAGGAACACCGCTTCACATTAAAAGTATACTGATACTGAATGATGGCATCAGAGAAACATTTATACGATTGTCCCTTTTAGGGCACAATGTTTGATGGCAGACAGTGTTCTGGAGGAATATGACAATActgtgttgtaaaaaaaaaaactgtggtaCCCACATCCTCTGTAGAGGAGGGGTTTCATTATATTTAAATGGTTGGTTTTAGCGACCAGACCATTAATGATTATTAATCTCTATCACTGCCTCCCTGAAGTGAACTTTCCTCTTGTTCTTATTGTGTGTTATTTATTCCTCTGGAGCTCTCGTAGTGCCCTTCCAACACTCCTCCCCTACCCTCACACACCTTTTTGTTAACACTGATTATGTTTGTGGACTCTCACAGACATTGTTTGTAAAACTAAGAATTCTGCAGCAGAATATTTTTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11613 lncRNA downstream 15235 29290300 ~ 29290813 (-) True G8584
TU11610 lncRNA downstream 23004 29282832 ~ 29283044 (-) True G8582
TU11603 lncRNA downstream 64210 29241612 ~ 29241838 (-) True G8575
TU11600 lncRNA downstream 84408 29221212 ~ 29221640 (-) True G8572
XR_005639809.1 lncRNA downstream 203724 29097909 ~ 29102324 (-) True LOC120562689
TU11646 lncRNA upstream 24642 29364466 ~ 29366481 (-) True G8609
TU11647 lncRNA upstream 30777 29370601 ~ 29371339 (-) True G8610
TU11770 lncRNA upstream 225044 29564868 ~ 29568981 (-) True G8694
TU11781 lncRNA upstream 275301 29615125 ~ 29615400 (-) True G8704
TU11784 lncRNA upstream 280195 29620019 ~ 29620484 (-) True G8707
XM_039814935.1 mRNA downstream 65696 29231428 ~ 29240352 (-) True glb1
XM_039806705.1 mRNA downstream 75207 29222264 ~ 29230841 (-) False cldnd1b
XM_039806697.1 mRNA downstream 75218 29222264 ~ 29230830 (-) False cldnd1b
XM_039806690.1 mRNA downstream 75218 29222264 ~ 29230830 (-) True cldnd1b
XM_039806648.1 mRNA downstream 99340 29199407 ~ 29206708 (-) True tacr3l
XM_039805653.1 mRNA upstream 42755 29382579 ~ 29437482 (-) True fbxo41
XM_039822485.1 mRNA upstream 114486 29454310 ~ 29458103 (-) True LOC120572938
XM_039797487.1 mRNA upstream 131169 29470993 ~ 29479759 (-) True mogs
XM_039797494.1 mRNA upstream 131169 29470993 ~ 29479198 (-) False mogs
XM_039797508.1 mRNA upstream 140371 29480195 ~ 29497663 (-) True pdcd4a
TU10756 other downstream 2727243 26567067 ~ 26578805 (-) True smim14
TU10758 other downstream 2727243 26567614 ~ 26578805 (-) False smim14
TU10760 other downstream 2727243 26567614 ~ 26578805 (-) False smim14
TU10761 other downstream 2727243 26567614 ~ 26578805 (-) False smim14
TU10744 other downstream 2770312 26533852 ~ 26535736 (-) False LOC120566984
TU11778 other upstream 249484 29589308 ~ 29593623 (-) True G8701
TU12128 other upstream 1631564 30971388 ~ 30974612 (-) True G8975
TU12451 other upstream 2599897 31939721 ~ 31948554 (-) False znf827
XR_005640553.1 other upstream 2882133 32221957 ~ 32226423 (-) True LOC120567365
TU12600 other upstream 3409543 32749367 ~ 32781138 (-) False lrba

Expression Profile