RNA id: XM_039798236.1


Basic Information

Item Value
RNA id XM_039798236.1
length 851
RNA type mRNA
GC content 0.45
exon number 6
gene id rnf24
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 29306021 ~ 29339847 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATATATTTCTCATTATCGTAGAATATCCATGAGCTCCGATTTCCCTCACTACAGTTTCAGGATGCCAAATATAGGGTTCCAGAATCTTCCCCTTAATATCTACATTGTGGTGTTTGGGACAGCCATCTTTGTCTTCATCCTCAGCCTCCTCTTCTGCTGCTACTTAATAAGGTTACGGCACCAGGCGCACAAAGAGCTATATGCATACAAACAAGTCATTCAGAAGGAAAAAGTCAAAGAGCTAAATTTGCATGAGATTTGTGCGGTGTGCTTGGAGGAGTTCAAACAGAAAGATGAGCTGGGGATTTGTCCGTGCAAACATGCTTTTCATAGGAAGTGCCTCATTAAGTGGTTGGAGGTGAGGAAAGTCTGCCCGCTCTGCAACATGCCCGTCTTGCAGCTCGCCCAGCAGGCCGGCAGCACGGACCCCCCCGTGCCAATACAGCAGCCTCTACCCGGCATCGAGAACCTGGTGTAGAAGAGCCAACCCCTCTCTTTTAGTacactacagacacacaaacacacatcccgTCACTCATACTCTCACCTGTACAGCTACACCTTTGGTATGAGTCTGTGGATAAACTGGAGTTCATGCGCAGATACTCATAAAAAACTGTGACTGTGCAGCCATCGTCACCTCTCGTATTCTTGCATTGGTTCACAAAAAAGGTTTCCTGATATCAGTTCTAACTGATAATCAActgttttcatgtttgtttgtttttttcttttttcatggaCAATGAAGAAGAGTTGATTTAGGAGAAGTTTCCTTCTTGGCCGAGATGTGGTCGATAACTTTTTCTCAACCAATGCACTTTTCTGGGGACACCAGCTAAAGACCAGG

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11613 lncRNA downstream 18877 29290300 ~ 29290813 (-) True G8584
TU11610 lncRNA downstream 26646 29282832 ~ 29283044 (-) True G8582
TU11603 lncRNA downstream 67852 29241612 ~ 29241838 (-) True G8575
TU11600 lncRNA downstream 88050 29221212 ~ 29221640 (-) True G8572
XR_005639809.1 lncRNA downstream 207366 29097909 ~ 29102324 (-) True LOC120562689
TU11646 lncRNA upstream 34013 29364466 ~ 29366481 (-) True G8609
TU11647 lncRNA upstream 40148 29370601 ~ 29371339 (-) True G8610
TU11770 lncRNA upstream 234415 29564868 ~ 29568981 (-) True G8694
TU11781 lncRNA upstream 284672 29615125 ~ 29615400 (-) True G8704
TU11784 lncRNA upstream 289566 29620019 ~ 29620484 (-) True G8707
XM_039814935.1 mRNA downstream 69338 29231428 ~ 29240352 (-) True glb1
XM_039806705.1 mRNA downstream 78849 29222264 ~ 29230841 (-) False cldnd1b
XM_039806697.1 mRNA downstream 78860 29222264 ~ 29230830 (-) False cldnd1b
XM_039806690.1 mRNA downstream 78860 29222264 ~ 29230830 (-) True cldnd1b
XM_039806648.1 mRNA downstream 102982 29199407 ~ 29206708 (-) True tacr3l
XM_039805653.1 mRNA upstream 52126 29382579 ~ 29437482 (-) True fbxo41
XM_039822485.1 mRNA upstream 123857 29454310 ~ 29458103 (-) True LOC120572938
XM_039797487.1 mRNA upstream 140540 29470993 ~ 29479759 (-) True mogs
XM_039797494.1 mRNA upstream 140540 29470993 ~ 29479198 (-) False mogs
XM_039797508.1 mRNA upstream 149742 29480195 ~ 29497663 (-) True pdcd4a
TU10756 other downstream 2730885 26567067 ~ 26578805 (-) True smim14
TU10758 other downstream 2730885 26567614 ~ 26578805 (-) False smim14
TU10760 other downstream 2730885 26567614 ~ 26578805 (-) False smim14
TU10761 other downstream 2730885 26567614 ~ 26578805 (-) False smim14
TU10744 other downstream 2773954 26533852 ~ 26535736 (-) False LOC120566984
TU11778 other upstream 258855 29589308 ~ 29593623 (-) True G8701
TU12128 other upstream 1640935 30971388 ~ 30974612 (-) True G8975
TU12451 other upstream 2609268 31939721 ~ 31948554 (-) False znf827
XR_005640553.1 other upstream 2891504 32221957 ~ 32226423 (-) True LOC120567365
TU12600 other upstream 3418914 32749367 ~ 32781138 (-) False lrba

Expression Profile