RNA id: TU11778


Basic Information

Item Value
RNA id TU11778
length 2837
RNA type TUCP
GC content 0.47
exon number 2
gene id G8701
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 29589308 ~ 29593623 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAGCCAAGTCTGAAATCCATCATCCGCGGATAATAAGTACTATTCCATGTGCAAGGAGAAATTGTTTTGCATTAAGAATATAGCTGAATTGTGATGacgacaaaaaaaacagaaaaatcacTGAAATCAATATTATCCCTGAGACCaccttaaaataaaatacatccattaAAGAAAATTAATATCTTGAATAAGTATTGACACTTAAAAAAGATGTGCGACTCCCAATGATTCCATTCTGCTTGTTCCTTGTTCAATGGCACTTtgcaaataaaataagattATTTTAGGTGTTAGCTAACCCAATCGTGTAAGCCAGTGTCCAATGAATTGTTGCAGTAGAAAACACTTGCGGTGGCATTTAAAGGGATATGTGTATTCACTATATCTGTCAAGGTCGGGTGACCTACAACATATTGAACATTGTTTTGATGTAAAAATACTGCTGGCAGGCATTAGCTGCTAACGGTGAAGCCATCTGAACCTCCATAAGGGGCGGGGTCATCTGTGGTACTGTCCCATGGTTGTCCTCGTTTAGTGCTGCTGGCCTGGGTGACACCGTCATTCGCAAAAAGAGTCGCTGTCACTATCAATGGTAATGACAGTGGGTAAGTGTTTCTCTGTGCGTTCGCTATTCTTGTGCCTTTTACTTTTCTTcttgtgtttcttcttcttcttatggTGATGCTTGCTCCGCTCATTAGAGTTTTCCTCGTTGACGAGCTCCACACTGAGGCTCCTGCTGGTCTTTCTTGACCTGTCTTTGGATTTTTTACGATGCTTCTCTTTGctctttttcttgtgttttgtcGGTAACGCGGGGGAGTCGCCGTTAGCATTTGAGTGGGGAGGTGTGCTTTTGGATGCCTCttccaaatgtcttgttttgtattTCCTCTTCCCACCAGGCTTACTGTTGTGAGATCTACTTTTTGTTGAAGGGGAGCGACTGCTGGAACAAGTCCTCGAACGAGAACGCCCCCTGTCCCGTCTCCGCGAATCTCGGCTGTGGCTCCTGGAGCAAGACTGCCGATCTGAGTAGTTGCGAATACTGTAATAGTAGGACCGCTTCTCTGTGTAATTCATCCCACTATTATTTCTCTCTTGGCTGTAATGCCTGTTTGATTGATAGCTGTAATCACGGTCTCTCCTTTTATAATTACGGTCACATTTTGAGTAGTCTTTGCTACTGGAGTAAGAAGAACCTCTTTCTCTGGATTGAGTTCTGCTGGGGGAGATCACCGGGCTCCTGCTAGAGTGCCTGCGCTCTGCACTTCTtgacctcctctttctcctatGGTCTCTGTCCTTAGACAAGTGCCTCTCCCTAGATCTATAATTACTGTCAAATCTTCTACCGGTGTCTTTTCTGTCTAACTTACCGGATGTGTTGTGTCTGCTAGATGTTGAAGAGCTGCACCTGTCTTTTGAATAAAACTGATGATAGTGGTCCGTTTCTGCATTTTCTGACTGTCCAGCACCACTTGGATCACTACTCTGTGAAGCTATGGGACTGAGACTGGAGAAGCGGATGTGTTGAGGTAGAAGAGGCACTGCTTTAATATCTTCACTGGCAGACTCATCAGAGTCAGAGGAGAGCTGAACCAGCTCAGGAGTCCTCTCTGCTGTTGGCTTAACGAAACTTATAATGACACAGTCGTCGCTGTCATGGGACAGACACTCTTCATCGTTAACGCCACCGTGTGCCACGTCCGTTTGGTTATGAGGAGTCATTTGCTGCGGAGAGGCCCCAAACTCCTGTGTCTCCTCCTCTAAACTGCTGTCTGAATCGGAGTCTAAGTCGAGGACCGACAGACACTCGGCCCTGCTCTGCTCCGCTGTCGTAGAATATGATGGCCCAGGCGTCTCATCATCCCACGCGGAGTGGCTCAGAGTAGACGCGGAGTCTCCTGGGGGGTCCAACTCCACTGAGTCTTCCTCATCCTCTGAGATAGCTATTACAGATGAATTGGAACTGCTGTCTTCATTTGAGGAAGGGGCGGGGCAGTCGTAGGCAGCGTGCTGGTCATAGGCCTCCATATTGAAGGGGGACTTTGCAAAGCTGATGAACTCATGCAAAAAGTGCTCCGTGCGCCCCTGGAGGAACGGCCTGAGCTCTTCCTGAATAGCTCCATCCTCCATATCATAACGTGTAATGCGTGACATGATGATGTGTTGAACTATGTTGACCAAAGAGCCATGGGCCCCATATAGCACAATGAGTTCTCTTTTTAGCCAGGGGATCAGTCTATGTAGGCAGGCAGGATTTCTCCTGAAGAACTCAGCGGAGGTGTCTCGGGAGCGGCCTCCATCCCGGATACTCCGAATCCTCACCCCCCGTCGGTACAGTTCCCTCCTGAAGTTTACCATTTCCTGCTCTCTGACACTGTTCACCGCCCTGCCTTCACTCGCAGCTCTCCTCTTGGCTGCCAACCTCTTCATCATCCGCCGGATGTAGCGGTCCTGGGGCTGTTGTGGAGGGTTTGCTGAGGCTTCAAACATTACTCCATTGTCTGGAGGTGGAGAGGTCCTTCCCCGCATCTGCCGATGGACGCCAGTAAGAGTTGTGCGGTATCTAAACCGCACTCCCCCAAAAGTCCCGAAAGAGCCATTATCCACCGGCTGCAGGTCATACTTCTTAAAGTCTTGATCTGATTTTATACTGTGATAGATTGAATTAAATGGCTGTTTGCATAGAGGGCACTCAGCTTTGTTCTTCGACCACTCCTGAATACAGCGGAAACAGAACTTGTGTAGGAGCAAGTCTTTACAAGCCCAGCAGCCTAGCTTCATAACACTCCTTCCATATCCCTACCCAACATtctgagtatttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11770 lncRNA downstream 20327 29564868 ~ 29568981 (-) True G8694
TU11647 lncRNA downstream 217969 29370601 ~ 29371339 (-) True G8610
TU11646 lncRNA downstream 222827 29364466 ~ 29366481 (-) True G8609
TU11613 lncRNA downstream 298495 29290300 ~ 29290813 (-) True G8584
TU11610 lncRNA downstream 306264 29282832 ~ 29283044 (-) True G8582
TU11781 lncRNA upstream 21502 29615125 ~ 29615400 (-) True G8704
TU11784 lncRNA upstream 26396 29620019 ~ 29620484 (-) True G8707
TU11879 lncRNA upstream 412771 30006394 ~ 30006912 (-) False G8790
TU11880 lncRNA upstream 412771 30006394 ~ 30007983 (-) True G8790
TU11947 lncRNA upstream 677841 30271464 ~ 30273350 (-) True G8834
XM_039797752.1 mRNA downstream 4237 29569270 ~ 29585071 (-) True LOC120557425
XM_039797743.1 mRNA downstream 4238 29569270 ~ 29585070 (-) False LOC120557425
XM_039810241.1 mRNA downstream 75138 29500668 ~ 29514170 (-) True LOC120564966
XM_039810249.1 mRNA downstream 80771 29500668 ~ 29508537 (-) False LOC120564966
XM_039797508.1 mRNA downstream 91645 29480195 ~ 29497663 (-) True pdcd4a
XM_039797793.1 mRNA upstream 15527 29609150 ~ 29611737 (-) True cdkn2a/b
XM_039797840.1 mRNA upstream 114747 29708370 ~ 29738207 (-) True cxxc4
XM_039797828.1 mRNA upstream 201158 29794781 ~ 29803619 (-) True ppa2
XM_039800099.1 mRNA upstream 230196 29823819 ~ 29830015 (-) False ints12
XM_039800107.1 mRNA upstream 230196 29823819 ~ 29830006 (-) True ints12
TU11635 other downstream 249484 29306021 ~ 29339824 (-) False rnf24
TU11633 other downstream 249484 29306048 ~ 29339824 (-) True rnf24
TU10756 other downstream 3010503 26567067 ~ 26578805 (-) True smim14
TU10758 other downstream 3010503 26567614 ~ 26578805 (-) False smim14
TU10760 other downstream 3010503 26567614 ~ 26578805 (-) False smim14
TU12128 other upstream 1377765 30971388 ~ 30974612 (-) True G8975
TU12451 other upstream 2346098 31939721 ~ 31948554 (-) False znf827
XR_005640553.1 other upstream 2628334 32221957 ~ 32226423 (-) True LOC120567365
TU12600 other upstream 3155744 32749367 ~ 32781138 (-) False lrba
TU12680 other upstream 3498837 33092460 ~ 33134920 (-) False G9418

Expression Profile