RNA id: TU12451



Basic Information


Item Value
RNA id TU12451
length 771
RNA type TUCP
GC content 0.49
exon number 5
gene id znf827
representative False

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 31934637 ~ 32006542 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TAAGAATGCATTTGCACTGCATCCCAACCGCAGGCTAGACAAGGAGCATCTGTCAAGAGACTCAGAAAAGGATGATGGGGAACCGGGAAACGGGTTTGCCCAGTGGAGACTAAATGAACAGCTCTTCCCCTGTCCTGTCTGTGGCAAGGTTTTCGGTAGACAGCAGACTCTTTCTAGACACCTGTCTCTTCACACAGaAGAGCGGAAGTACAAGTGTCACCTGTGTCCTTACGCAGCCAAGTGTAGGGCTAACCTCAATCAGCACCTGACCATCCACTCTGTCAAGCTGGTCAACACGGACGCTGAGCAGATCGTCAGCGCTGTTACAGCCGACTCTGCCGAGCGCAAGAACTGCCCCTTCTACTACAGCTGCCATGTGTGTGATTTCCAGACGGAGCTGAATGCCCAGTTTGTCAGCCACATGTCGCTCCATGTGGACAAGGAGCAGTGGATGTTCTCGCTCTGCTGCAGCGTCTGTGACTACGTCTGCATGGAGGAGAACGACATGAAGAACCACATTAGTACTGGACATGCAGGTCTAAACTCAAGGAGTCCCCTCAGTGAGACCAAGAGTACCTCCTCGTCCCTCTCGGCCCTCAGCGACTCACTCAACAGCTCAGAGGGCGGAGACCTCACCCACGGTAATGAAGAACTGCGGGGCCTGCTCGCCCCGCCCTCCACCGCAGGCAGCCAGTCCAGCTCTGGAAGCCATTCAGGATCAGGAACTGAGGACAAGTCTGACAAAGGCAAGGCATTGTGGGAACTATTGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU12389 lncRNA downstream 239421 31699716 ~ 31700300 (-) True G9179
TU12321 lncRNA downstream 586373 31352559 ~ 31353348 (-) True G9123
TU12296 lncRNA downstream 611412 31261992 ~ 31328309 (-) False G9111
TU12297 lncRNA downstream 611412 31261992 ~ 31328309 (-) False G9111
TU12295 lncRNA downstream 611412 31325284 ~ 31328309 (-) True G9111
XR_005640563.1 lncRNA upstream 135209 32083763 ~ 32132374 (-) True LOC120567382
TU12557 lncRNA upstream 624459 32573013 ~ 32573946 (-) True G9322
TU12612 lncRNA upstream 824650 32773204 ~ 32790684 (-) False G9370
TU12621 lncRNA upstream 838332 32786886 ~ 32792497 (-) True G9370
TU12645 lncRNA upstream 888467 32837021 ~ 32839250 (-) True G9392
XM_039810854.1 mRNA downstream 172824 31739471 ~ 31766897 (-) False si:dkey-27h10.2
XM_039810845.1 mRNA downstream 172824 31739471 ~ 31766897 (-) True si:dkey-27h10.2
XM_039795458.1 mRNA downstream 207634 31701755 ~ 31732087 (-) True frem3
XM_039795482.1 mRNA downstream 248657 31682961 ~ 31691064 (-) True usp38
XM_039796572.1 mRNA downstream 260960 31623918 ~ 31678761 (-) False gab1
XM_039814334.1 mRNA upstream 273403 32221957 ~ 32226419 (-) False LOC120567365
XM_039801634.1 mRNA upstream 329302 32277856 ~ 32296565 (-) False prmt9
XM_039801617.1 mRNA upstream 329302 32277856 ~ 32295831 (-) False prmt9
XM_039801625.1 mRNA upstream 329302 32277856 ~ 32293735 (-) True prmt9
XM_039794877.1 mRNA upstream 446707 32395261 ~ 32480387 (-) True nr3c2
TU12128 other downstream 965109 30971388 ~ 30974612 (-) True G8975
TU11778 other downstream 2346098 29589308 ~ 29593623 (-) True G8701
TU11635 other downstream 2599897 29306021 ~ 29339824 (-) False rnf24
TU11633 other downstream 2599897 29306048 ~ 29339824 (-) True rnf24
TU10760 other downstream 5360916 26567614 ~ 26578805 (-) False smim14
XR_005640553.1 other upstream 273403 32221957 ~ 32226423 (-) True LOC120567365
TU12600 other upstream 800813 32749367 ~ 32781138 (-) False lrba
TU12680 other upstream 1143906 33092460 ~ 33134920 (-) False G9418
TU12681 other upstream 1143906 33092460 ~ 33134920 (-) True G9418
TU12682 other upstream 1143906 33092460 ~ 33134920 (-) False G9418

Expression Profile