RNA id: TU12991



Basic Information


Item Value
RNA id TU12991
length 879
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G9639
representative False

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 34023083 ~ 34186777 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TTTATTGCCAGTAGGAAAGCGTGAGCTTGTGGCAGTATTCAATAAAAACCTTAACAAGACCATAGCattgctcacacacacatagacacctGAAAAAGTCCCGTGTCCATGGATAACTCTGCACTATAAATATATTGGGTCCCATTTTCTTGGTGGAAAAATAAAGAGGTTCCAAAGTCAAAatttacaaacaaacaaatgaaagaaaaaaaaaacaacaacaagaatATGCAGTCATTCATTGAAGACCCTTTTTGAAATGAGCAGGAGACAATAAACTTTACGAGTACACAGTTTCGGAAAAGCCACGCTCTTTTCTTCTCACTCTTTTTCTaacgtttcctttttttttgtgaatgtaagCACAGTAAGGCTGATAATGTCACACCATTTAActctttttgaaaataaaagcatagaATATCTACAAAACCTAgtaaactttgaaatcaaaactgtacatttaaatttacattgaaaatgaggacttgtataaaaaacattttgcttgGTTGTATTTATAGAAACAGagatattcttttcttttttttttctcatgatgCTTTTCCTGTTCTACATTGACGTTGTCCCTTCGGACGATCCACTTCCTGTGTATGATGACAGTTACTTAAAGCGATGGCACCGCCAACTCAAAGGGACAGAAGTTGGACTGAGCAGATGTTAAGATGCTACAGAGTCTCTCCTATAGCTTCATGAGATCTTCTCAGCAACCAGTCTCAACAACCCCCGTGTTTAGACCCAATTCAtcgtgtgtgtgaatgtatatgtatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTGTGTTTTCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005641973.1 lncRNA downstream 266199 33771863 ~ 33773421 (-) True LOC120575231
TU12962 lncRNA downstream 317547 33721843 ~ 33722073 (-) True G9618
TU12959 lncRNA downstream 373826 33665268 ~ 33665794 (-) True G9615
TU12953 lncRNA downstream 396224 33643080 ~ 33643396 (-) True G9612
TU12949 lncRNA downstream 423700 33615623 ~ 33615920 (-) True G9608
TU13028 lncRNA upstream 112949 34222887 ~ 34223107 (-) True G9673
XR_005639709.1 lncRNA upstream 154622 34264560 ~ 34270464 (-) False LOC120562219
XR_005639708.1 lncRNA upstream 154622 34264560 ~ 34270464 (-) True LOC120562219
TU13050 lncRNA upstream 219779 34329717 ~ 34329965 (-) True G9695
TU13100 lncRNA upstream 245070 34355008 ~ 34355326 (-) True G9730
XM_039799815.1 mRNA downstream 434488 33592642 ~ 33605132 (-) True frg1
XM_039812116.1 mRNA downstream 450579 33580853 ~ 33589041 (-) True asah1b
XM_039787194.1 mRNA downstream 488063 33548703 ~ 33551557 (-) True sart1
XM_039787275.1 mRNA downstream 488093 33548703 ~ 33551527 (-) False sart1
XM_039810334.1 mRNA downstream 492237 33541549 ~ 33547383 (-) False LOC120564990
XM_039810220.1 mRNA upstream 280210 34390148 ~ 34400994 (-) True LOC120564947
XM_039811009.1 mRNA upstream 295114 34405052 ~ 34411361 (-) False tlr3
XM_039810998.1 mRNA upstream 295114 34405052 ~ 34411360 (-) True tlr3
XM_039805730.1 mRNA upstream 406849 34516787 ~ 34521757 (-) True npy2r
XM_039804103.1 mRNA upstream 417115 34527053 ~ 34529098 (-) True LOC120561135
TU12854 other downstream 521497 33497160 ~ 33518123 (-) False stox2a
TU12774 other downstream 755540 33283078 ~ 33284080 (-) True G9488
TU12680 other downstream 904700 33092460 ~ 33134920 (-) False G9418
TU13113 other upstream 342912 34452850 ~ 34457635 (-) True G9740
TU13477 other upstream 1288702 35398640 ~ 35400474 (-) True G9997
XR_005640911.1 other upstream 1367293 35477231 ~ 35477360 (-) True LOC120569607
TU13574 other upstream 1474532 35584470 ~ 35586582 (-) True LOC120572869
XR_005640401.1 other upstream 1834110 35944048 ~ 35969266 (-) False micall1a

Expression Profile