RNA id: TU13102



Basic Information


Item Value
RNA id TU13102
length 263
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G9732
representative True

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 34365016 ~ 34365278 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


atgaaagctcagatgggccgatctggaatcttgctccttatgaggtcataaggagaaaggttacctcccctttctctgctttgcccgcccagagaatttggcccacccatgagagagagacatcatggctttcaaaccagcaaagtggcagttggtcaaggccacccccccactctccaccttgcacccccctctcctcctcaatagctacagacacagaaatggcacatactaaggaaagctcattgtgggactggctctag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU13100 lncRNA downstream 9690 34355008 ~ 34355326 (-) True G9730
TU13050 lncRNA downstream 35051 34329717 ~ 34329965 (-) True G9695
XR_005639709.1 lncRNA downstream 94552 34264560 ~ 34270464 (-) False LOC120562219
XR_005639708.1 lncRNA downstream 94552 34264560 ~ 34270464 (-) True LOC120562219
TU13028 lncRNA downstream 141909 34222887 ~ 34223107 (-) True G9673
TU13118 lncRNA upstream 97680 34462958 ~ 34468183 (-) True G9745
TU13121 lncRNA upstream 108894 34474172 ~ 34478450 (-) True G9747
TU13146 lncRNA upstream 165065 34530343 ~ 34532004 (-) True G9770
TU13256 lncRNA upstream 315263 34680541 ~ 34685004 (-) False G9836
TU13257 lncRNA upstream 316892 34682170 ~ 34685004 (-) True G9836
XM_039799815.1 mRNA downstream 759884 33592642 ~ 33605132 (-) True frg1
XM_039812116.1 mRNA downstream 775975 33580853 ~ 33589041 (-) True asah1b
XM_039787194.1 mRNA downstream 813459 33548703 ~ 33551557 (-) True sart1
XM_039787275.1 mRNA downstream 813489 33548703 ~ 33551527 (-) False sart1
XM_039810334.1 mRNA downstream 817633 33541549 ~ 33547383 (-) False LOC120564990
XM_039810220.1 mRNA upstream 24870 34390148 ~ 34400994 (-) True LOC120564947
XM_039811009.1 mRNA upstream 39774 34405052 ~ 34411361 (-) False tlr3
XM_039810998.1 mRNA upstream 39774 34405052 ~ 34411360 (-) True tlr3
XM_039805730.1 mRNA upstream 151509 34516787 ~ 34521757 (-) True npy2r
XM_039804103.1 mRNA upstream 161775 34527053 ~ 34529098 (-) True LOC120561135
TU12854 other downstream 846893 33497160 ~ 33518123 (-) False stox2a
TU12774 other downstream 1080936 33283078 ~ 33284080 (-) True G9488
TU12680 other downstream 1230096 33092460 ~ 33134920 (-) False G9418
TU13113 other upstream 87572 34452850 ~ 34457635 (-) True G9740
TU13477 other upstream 1033362 35398640 ~ 35400474 (-) True G9997
XR_005640911.1 other upstream 1111953 35477231 ~ 35477360 (-) True LOC120569607
TU13574 other upstream 1219192 35584470 ~ 35586582 (-) True LOC120572869
XR_005640401.1 other upstream 1578770 35944048 ~ 35969266 (-) False micall1a

Expression Profile