RNA id: TU1311


Basic Information

Item Value
RNA id TU1311
length 906
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G959
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 3082231 ~ 3083136 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acccacggaaaatactgaccgCCCAcgagtgccagactgccagttcatttttacgttaatctaaaattaaacactgcagttgtggagcgtctgtcatagtgtgattggttgtgtcggtggcattgattcttaatttcccacgaagctgatcgcggttacgtgccagttaaacttttcatctccgatcctatctgtatttgtgagaagtggcgctgtcctgagttgaaagatagcttataggctaggcctactgtgcgcgtgtgagcacccacggaggaaaacataaattggCGCCTATCCCTCTGCACAgcaaataataaagtttggctataaggattacacatatgaccaggcaaagaaaaaaaaagaaacggcaGTTTGCAAGGTCTGCAGTACTTATTTCCGACGTcgaatttcatcagacacttcaaatcgggagagattcaggttccagtccccatattcagctgaaccactATTTGGACGTTTGTAATGGACAGAAGTCCCTTCAGTTTTTggccatgaataagcacaccctcccctctttgttcAAGGTGGCGGTAAGAGCGAATAAAACTAggcacacataggcctacacacacaacacaaacctctctctctctctctctctctctctctctcataaacacacacacatgcagacgtaagtatgtgaataaagctaggcacacatacaacacactgcactctcaaacacgcacacattcactcacaaatacactgtcaaatatcaacatatactttccattccatgtgataagCAAAGGTGGTGGTATTCAGCTATTctcaaagaatatgttttgttctttaagagaaggaaaggttaaaggatgtgtttctgtctcataaaagtgaggcatgtttgaagaatattatttgacttag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1307 lncRNA upstream 2041 3079048 ~ 3080190 (+) False LOC120567073
TU1308 lncRNA upstream 2041 3079048 ~ 3080190 (+) False LOC120567073
TU1309 lncRNA upstream 2041 3079048 ~ 3080190 (+) False LOC120567073
TU1326 lncRNA upstream 36688 3044933 ~ 3045543 (+) True G973
TU1322 lncRNA upstream 89659 2992217 ~ 2992572 (+) True G969
TU1417 lncRNA downstream 13226 3096362 ~ 3135361 (+) True G1045
TU1469 lncRNA downstream 187877 3271013 ~ 3272231 (+) True G1093
TU1475 lncRNA downstream 242479 3325615 ~ 3384416 (+) True G1098
TU1476 lncRNA downstream 242479 3325615 ~ 3384416 (+) False G1098
XR_005637832.1 lncRNA downstream 256359 3339495 ~ 3341743 (+) True LOC120551115
XM_039813872.1 mRNA upstream 2794 2995029 ~ 3079437 (+) True LOC120567073
XM_039813918.1 mRNA upstream 10758 3068398 ~ 3071473 (+) False LOC120567079
XM_039813894.1 mRNA upstream 10758 3068398 ~ 3071473 (+) False LOC120567079
XM_039813886.1 mRNA upstream 10758 3068399 ~ 3071473 (+) False LOC120567079
XM_039813910.1 mRNA upstream 10758 3068399 ~ 3071473 (+) False LOC120567079
XM_039798383.1 mRNA downstream 26455 3109591 ~ 3128050 (+) True LOC120557776
XM_039798390.1 mRNA downstream 26455 3109591 ~ 3128050 (+) False LOC120557776
XM_039798348.1 mRNA downstream 44953 3128089 ~ 3157138 (+) False LOC120557752
XM_039798356.1 mRNA downstream 44953 3128089 ~ 3157138 (+) False LOC120557752
XM_039798365.1 mRNA downstream 44960 3128096 ~ 3157138 (+) False LOC120557752
XR_005640520.1 other upstream 10758 3068613 ~ 3071473 (+) True LOC120567079
TU1184 other upstream 381256 2626243 ~ 2700975 (+) True G879
XR_005640344.1 other upstream 513873 2558876 ~ 2568358 (+) False LOC120566146
XR_005640345.1 other upstream 513873 2558877 ~ 2568358 (+) False LOC120566146
TU983 other upstream 770144 2307285 ~ 2312087 (+) True G714
XR_005639016.1 other downstream 44953 3128089 ~ 3157138 (+) True LOC120557752
XR_005639017.1 other downstream 44953 3128089 ~ 3157138 (+) False LOC120557752
TU1461 other downstream 172781 3255917 ~ 3259758 (+) False dzank1
TU1593 other downstream 384988 3468124 ~ 3480130 (+) True LOC120555387
TU1635 other downstream 414625 3497761 ~ 3499104 (+) True G1191

Expression Profile