RNA id: TU13121


Basic Information

Item Value
RNA id TU13121
length 3819
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G9747
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 34474172 ~ 34478450 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaccccatatatttgaccggtagtgtatatgtCATGAATTATATGGTTACTTATTTCTAAAGATTTCCTTCCTGCGCAGAGACAAGTGTACAGTATGAGCATGGTTGAATGAAGACATGCCCCCCTACCCTTCGCCCTCTAACGGGGGACAGATAGGACCTCCGGAACAAGATGGGGCTACGAGGAGGTTTACCACCAACAACTGGATCCTGCTTAACAGGCAGAAAGACCAGAAGCAACACACCGATAATCTTCAACAGTAAACGAGTCAGCAGCCTTCACTATGAGCtgaacacacaagcacaaaggCTAACGACGTGCTCTAAAAACGTAATCCATCAGCATGCCAACGCCAATCCTCCTAAACACACCACAGTACAACCAACACGAGCAAGAACAAGAATGTTTCCGTTGTCCATAAATCATCACTATATCACTTACAGGACAGTGCACAATGTATGTTAGTGTGCAAACGGCGTAGTAGTCTCAGCTATGGCTGCATAAAAAAGGATTATTTTTCATAACTGTTAATCTGTTGACACATTTTGATTAATCGTTTAGTTACTGAAAataccaaaaatagtgaaaaatgcccatcacaattcACCAGATTGTATTTTTGTCCAACAAAACGGTCCAAAACCTCATTTagaatgatataaaacaaaagaaaagcatcaaattgTCACATAATTTTCCTGGCATAAATAACAAACGATTAATCAGATTTGAAAACTTGtccattcattttctgtcaattgaTTAGTTGCCTAATCACTTCAACCATAGTCTCAGCTTCAGTAATGTCAACGACCCAAAAGTTAGAGAAAGGTATCATCAGATGAGTTCTTCTCATAGTCCTTGGCACCACAAGCACAATCTACATCAACGCCAACATCTCCACATTCCAGCTTTACCTTCACCTTGGGAGACCTACATCCTGGATGGGGTACAGTTGGGGGAGAGAGCGGAGTGGCGAGGGGAGGAGAGGCGGGTTTAGGGGGAGTCAGGGCGGAATGGGGAATAGGCGACTCTGAGTTGGGGCAGGATGTGACCAgatgagacagacagggagagctTGGGGGGTGAGAGACAGAGCGCTGTGAGGGAACGTTTGAAGAGGGGTGAGAGGAGTGAAAAGGAGATGGGGATACGGGCGGAGAGGGGGAGACTGAAGGGAGCGGTGATGAGGCGTGAGACATGAGGCGAGGCAGGGATGGGGGCCGAGGGGAgacagggggagagggagggatggtgTTACGATCCTGCTGTTGTGACTTTGAGAAAGAAGACGAAGGAGTGAAAGAAGAAGTAGAAGATGGAGAAGGAGTGAAATAAGTAGGAGATGAAGAAGTAAAGGAAGAAGTGGAAGATGGAGTGAAAGAAGTAGAtgatgcagaaaatgaagtagAAGATGAAGAAGGCGTGAAAGTAGAAGTAGATAAAGGAGTTAAAGAAGAAGTAGAAGATAAAGGAGCATAGGAAGAAGTAGAAGTGGAAGAAGGAGTGAAAGTAGAAGTAGATGAAGGAGTTAAAGAAGAAGTAGAAGATAAAGGAGTAAAGGAAGAAGTAGAAGATGAAGGAGTGAACacagaagtagaagaagaggaagggggAGGTAAGGATGTCAGAGGCGGTGGTATGGAGGGTGAGGGGAGGCCGGGGGGAGGAAACCGTGTCAAAGTGGAAGGAGAGACATCAGCCTATAGAGGTAATGACACACACATCAATTCTGAGTCACAGAAGCTAAATGCTGAGGATTTTTACTGAGCCCAGGAAAGGACATggagaaaaatattttaaatgcatgcttttaaaaaaaacaagtaaacaGTTTGCTGTGCAATAGTGATAGTTTAAGACTTGAGTGTCCATGCAATTCCTCTTTGATTGTTAATGCACGAATAAAACGTCAAAAACTCCCTCACATGTAAAGTACTTTATCCTTACACTTACATTTGAGATCACGCCCTGTTTACTATGTGGGGCACTATATTAATTATTCACCATTGTGGGTGTGAAATAGACTCACTGTATAGCAGCATCAAAAATGCAGATgggtcatagtaggaaaagcacaggtgttattACAAACATTATCGATGGCTCCATTCTGTTCATGTGTCCCAATAAGCCATGggagtgtgacagtgagccaggaccctgaaactaaAGCAGCTGAATGGAAATCAGCAAATATTAAATTTGATAATTTACactttcctactgtgacatgtcaaaatgtcttctgtgaaaaaaaaaggcctatggAACACAAAGACTGTTTCACTCTGCACAGAGTCACATGCACTGCTGTAGATGAGGGTATAAAACAACAGGTAATCTAACACACTCCTCAATCGCCATTAGTGTTAAGAAACATCTGTCACCATAGATGCCTTGATCATTAAACTGTTTAGTTATATAACATATTACTTCCCTGTAAATGCATCCAGACTTATGGCTACGTGACACAAGTACACTGGCCTTTGTGTCAAACTTTTTAAGAGAAAGCAAAAGTAGTTCTAATTTTTCTTGGATTTAAAACATTTCCCTCCATCTCCCTTCCAGGGCCCTGTAGTGTTGCTCTCAAAGCTCACACCATGCTCTACCTGTGGACTGAGTCTCTCATTTAAACCTTTAatgtcctcctctctgtcctctctagCTTCATCCTCTTCCTCAATGAACAACTCAGTATATCCCCTTCCTGTCACCGATGGCGGTCTCTGAGGCTCGACTGGTTGCTCGTTCAGAGTTTTTGAACGCCCTCCCCAAGTGATGGGTAGTGGCTCCATTGTCATAGGCTTGTGAAACTGCACCTCTAACCGAACGCTGCCTGCCGAGTCGCTGGCTGGAGTGACTGCTGCGGGTTTCACTGCTGGCTGATGGGATTCTTCTACTTTTAGCGTAAACCTGCTCTGGGATTCATCGGTTAGCGTAGCTGGTGGGGAATCTACCAAAGACAATCTTGAAAAGTAAGCATCGTCTTTACTGGTAGAACCATCCAGAACCATGGACAACAGCTCGTCATAAGGGTCTTTTACTTGCAGCTCAACATCAGGGATTATGCTGCTTTTGTGTACTTCCACATTTGACTTGTGCCGTGGTGGAACCTGTTTGGGCGACTTTATGGGCTCTGGCACTGTGCAGGACAAAACCTCTGGCTTAAAAATGTGTAATGCTTGGGCTATTCCTTTGCCACTGTTGTATCGCAGTGAAGAGACAGGCAGTGCAGAGGTAAATGAGGAatgaggaaggggaggaggaggaggtggttgGGAGTATGGCACGGCAGGGGGGGTGTGACCTAAACTGAGTCTCTCTTCTTTTAAAGGAGGAGTTATGGAAAACCTCTGGGGCAGCATGGCAAAGCCTCTTTGTGACACCGCATTGGGCTCCTGAGCCTTTAGGAAAGGTGTAAGGTcagtggggagggggggggggggggtggtgggcgGTACAGGGGTGGTAGACAGGGAGCAAGCTGGGGTAGACGCTGATGGGTCCAACGTGAGAGACAGCCACTCGTTGGTGATAGCTTGCAGGTCGAGCCTTCTCAACAGGGGGTGAGGGGAGGGGAGGTCACGAGTAGTGGAGGATGGAGGTAGATGGTAGAAAGGCTCCTTGATGGGTGTAGAGCTTGGTGTCCTGTTGCCAGGGTAACTATGTGGGTCTATGTGGTGGGCAGAGCTCTTGGACGGGGAGCGCTTGACGATGTCAACGTATGACACAGGAAAGATGCCCTGTTTGGTTGTGTCCGGGATCTTTCCCTCGTACCAGTTCTGGTCAACCTGTCTTATCACAATAAGTCTctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13118 lncRNA downstream 5989 34462958 ~ 34468183 (-) True G9745
TU13102 lncRNA downstream 108894 34365016 ~ 34365278 (-) True G9732
TU13100 lncRNA downstream 118846 34355008 ~ 34355326 (-) True G9730
TU13050 lncRNA downstream 144207 34329717 ~ 34329965 (-) True G9695
XR_005639709.1 lncRNA downstream 203708 34264560 ~ 34270464 (-) False LOC120562219
TU13146 lncRNA upstream 51893 34530343 ~ 34532004 (-) True G9770
TU13256 lncRNA upstream 202091 34680541 ~ 34685004 (-) False G9836
TU13257 lncRNA upstream 203720 34682170 ~ 34685004 (-) True G9836
TU13259 lncRNA upstream 227408 34705858 ~ 34706062 (-) True G9838
TU13262 lncRNA upstream 244530 34722980 ~ 34723718 (-) True G9841
XM_039811009.1 mRNA downstream 62811 34405052 ~ 34411361 (-) False tlr3
XM_039810998.1 mRNA downstream 62812 34405052 ~ 34411360 (-) True tlr3
XM_039810220.1 mRNA downstream 73178 34390148 ~ 34400994 (-) True LOC120564947
XM_039799815.1 mRNA downstream 869040 33592642 ~ 33605132 (-) True frg1
XM_039812116.1 mRNA downstream 885131 33580853 ~ 33589041 (-) True asah1b
XM_039805730.1 mRNA upstream 38337 34516787 ~ 34521757 (-) True npy2r
XM_039804103.1 mRNA upstream 48603 34527053 ~ 34529098 (-) True LOC120561135
XM_039798458.1 mRNA upstream 78523 34556973 ~ 34560875 (-) True LOC120557822
XM_039824665.1 mRNA upstream 162754 34641204 ~ 34664220 (-) False fam193a
XM_039824733.1 mRNA upstream 162754 34641204 ~ 34664220 (-) False fam193a
TU13113 other downstream 16537 34452850 ~ 34457635 (-) True G9740
TU12854 other downstream 956049 33497160 ~ 33518123 (-) False stox2a
TU12774 other downstream 1190092 33283078 ~ 33284080 (-) True G9488
TU12681 other downstream 1339252 33092460 ~ 33134920 (-) True G9418
TU13477 other upstream 920190 35398640 ~ 35400474 (-) True G9997
XR_005640911.1 other upstream 998781 35477231 ~ 35477360 (-) True LOC120569607
TU13574 other upstream 1106020 35584470 ~ 35586582 (-) True LOC120572869
XR_005640401.1 other upstream 1465598 35944048 ~ 35969266 (-) False micall1a
XR_005640904.1 other upstream 1732678 36211128 ~ 36211215 (-) True LOC120569591

Expression Profile