RNA id: TU13257


Basic Information

Item Value
RNA id TU13257
length 2675
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G9836
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 34680541 ~ 34685004 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCCATAAGCTTTTCTTGCCCCCTCAGTGACGATGTCTGTTATCTGTCTTGCTGTAGCCCTCTGTTAGCCAAATGTACTACTGTATAAGGCTTTGCCTCGCTTCCTATTTCTTTGTTGGCCCCTGGTGGTGACTTCTCATACAAGCTGCTACTAcaaacacAACATTTGTTAATGTTTCATTATTACAAAAAGGTAGAGCTCCACTAGCACATCATTCTGTAGGTCTTCAggaaaactaaactaaatcaaAGCCAAATGGCAGCATTGATCATAAACTACATATTCAAAGGCAAAATAGAGAAaattacaaatatatatatccatCTATTTCAGGGAAACATTAGATTGTTGTACAAGATTCACACTCTTAAACTGCTATGGCGAGCCATAGGGAAAGTACAAATTGAGGACAGCTGGTTATCAATACCGGGGTACAATATGTcctctttaaaaaatatacttttatgcAGCCCAATGATAGAAACCGTTAGCAGCTCAGACAAAGGATGCTGGTCTTTCAAATTTACAAAAGGTTTCTCAAGTTAATCGTATTTTGGTTGTCACCTTACATATCGTACAGCACTTACAAGTTCTTATGTAATTAGTCCCAAATGCGTAAATGTGAACATGTGCAATATGGATAAATATCTTTGAGAACAGCaagttttaaaatatatttactttCTGAATGTTACTGGAGTATTCTGTAACATAGCCATCATGTTTGTGTTGCGTGGAGTGTGTTAACATTTACAGTTGTACAGGTTTTAACTGTACTCCAAGAGtgtgtgcatgggtgtgtgGTCCATTCTCTTCCTTCAAGAGTTGGTcccgaaaaaaagaaaaaaaaaaaactggtagtGAGAGCGTCGGTTTTCAACAGCAAGACCAGATATCAAAGCACGGAGGGGAAGAGAAGAACTAATTCAAGAATTCAAGGCACATTTAGTCACATAAGGCTGGTCCAACATTTTCTCTGGAATCTAAGAGAATCAACATTTTTACCCATTCAGTCAAATGCCATGAATGTAAAGAAAACAggaatgctaaaaaaaatccaaaggGTGATATTGATTACAAGTAGCATTGTGTCAACATAACAACATACCAACATACAGGATTTGTTGTGAACGGCGATCAGTATGATTTTAACGGATCAATTTAagggaatagtttgacattttgggaaatactctaatttgttttcttgctgagagttagatgagaagattaaaTGTTAAGCTACAGCctgcagctggttagcttagcataaagactggcaTCAGAGTGAAATACtgagcctggctctgtccgaaGATTAGATTAAACCACAATTTGATTTTttactttggtttttgtattAGTGAggtttagaggtgctggtaggcagaacgttttttacctttggacagagcccgGCTAGCTGTCCCCCCCGTCCCGTTTCTAGtcattatgctaagctaaactaaccggctgctggctgtagccttaAATTAAAGAAACTCTCAgtaaaaaagcaaataagcgcatttcctaaaatgccaaaactaCCACTTTAATCAGAGTTTGCTGGTTAAAATGACcagtttgcatttgcatgattCATGAATCTGAATGATGCTTTGCCCCGTTTATCACAACCGGTTTAAGATCAAATCATGAGAGAATTCGTATTCAGTCTCCTGAAGCTTCCCGATTGGTCTTTCAAAAAGCATTCATCCACATCTCAGTCAGCTGATAAGAGTAATGTCAATAATGGGTAAGACGGCAGTGTTTTGGATCCCGTAGCTGCCCTTACAGAGCCAACATGTCCGCCGTGCTGGGATACAACATTCATACGCTGGAATACAAAAAGCCATTTACAGTTTTCCAAATGTGTTTACTGCAGCAACTCCCGTTCAACAGATTTGTCAAACAGTATAAAAGTGCGTCTCCCATGATTTCAAATAACTGCAAGATGAAAAGTATGATTTAACAAGTGTCAAACAGATTATGGGAGGATTTTTTGTCCTCCTTTTTGTATTGAGTTGAAAGATTTACAGTTCTGAAAGTTTGAAAAGGCTGTGACAGTAGAGttgaagggagggggggggtcctGTAGTTTCTGTAGAATTTGACATTTCCTGTCAAACTCAGCCGCTGTGGCTTTCGAAAGTAGTGATTAGTGCTCTTCCAGCCAAGATGGACTGTCCCCACCTGGCATTTTCAACTTGATGTGGAACTGCTTGAGTGTCTGTTCCAGCTGCTGTTGGTTTCCAGCGTAGTACGCAGCTATGGCGTTGTGGAACAGGATGAGCTGGTTATGCAATACCTTCACCTTGTTCTCTTCCAGGAACTTCAGCTTGACGGAGACGTCGTTCCGCATCCTCTCGTACTTCTCGCGGTGGATCTGGAACTGCTGCTGGCAGTGCTCAATCTTGGGCATGGCGGCGGCGTCACGGGGCCCCAGATTCAACTCCTCCAAATCTGTACGGTACGCGTCATACTCAACCCTAGATGTGTGGTGTTATTTATCAGTATCACAAATATGCAATATGAGCGTAtaccagggctgtagtcaagtccacctttgtagagtccaagaccaggactagtcgagaccgggtcaagttcaagtccaatcaagaccgagtccaaaaaagtttgagtccaagtcaagtccgAGTCCAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13146 lncRNA downstream 150166 34530343 ~ 34532004 (-) True G9770
TU13121 lncRNA downstream 203720 34474172 ~ 34478450 (-) True G9747
TU13118 lncRNA downstream 213987 34462958 ~ 34468183 (-) True G9745
TU13102 lncRNA downstream 316892 34365016 ~ 34365278 (-) True G9732
TU13100 lncRNA downstream 326844 34355008 ~ 34355326 (-) True G9730
TU13259 lncRNA upstream 20854 34705858 ~ 34706062 (-) True G9838
TU13262 lncRNA upstream 37976 34722980 ~ 34723718 (-) True G9841
TU13264 lncRNA upstream 38773 34723777 ~ 34726114 (-) True G9842
TU13292 lncRNA upstream 139628 34824632 ~ 34825454 (-) True G9867
TU13300 lncRNA upstream 162153 34847157 ~ 34847486 (-) True G9874
XM_039824665.1 mRNA downstream 17950 34641204 ~ 34664220 (-) False fam193a
XM_039824733.1 mRNA downstream 17950 34641204 ~ 34664220 (-) False fam193a
XM_039824635.1 mRNA downstream 17950 34641204 ~ 34664220 (-) True fam193a
XM_039798458.1 mRNA downstream 121295 34556973 ~ 34560875 (-) True LOC120557822
XM_039804103.1 mRNA downstream 153072 34527053 ~ 34529098 (-) True LOC120561135
XM_039794278.1 mRNA upstream 256379 34941383 ~ 34974821 (-) True slkb
XM_039806999.1 mRNA upstream 531833 35216837 ~ 35220376 (-) True adra2c
XM_039797339.1 mRNA upstream 687013 35372017 ~ 35398518 (-) False dok7b
XM_039797330.1 mRNA upstream 687013 35372017 ~ 35398518 (-) True dok7b
XM_039816493.1 mRNA upstream 719811 35404815 ~ 35451211 (-) True rgs12b
TU13113 other downstream 224535 34452850 ~ 34457635 (-) True G9740
TU12854 other downstream 1164047 33497160 ~ 33518123 (-) False stox2a
TU12774 other downstream 1398090 33283078 ~ 33284080 (-) True G9488
TU12681 other downstream 1547250 33092460 ~ 33134920 (-) True G9418
TU13477 other upstream 713636 35398640 ~ 35400474 (-) True G9997
XR_005640911.1 other upstream 792227 35477231 ~ 35477360 (-) True LOC120569607
TU13574 other upstream 899466 35584470 ~ 35586582 (-) True LOC120572869
XR_005640401.1 other upstream 1259044 35944048 ~ 35969266 (-) False micall1a
XR_005640904.1 other upstream 1526124 36211128 ~ 36211215 (-) True LOC120569591

Expression Profile