RNA id: TU13264


Basic Information

Item Value
RNA id TU13264
length 2338
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G9842
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 34723777 ~ 34726114 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTACACAGCAACAtgtgaattttatttatttctcggAGGTCATCATCAGAAATACAAACTGCAGAAGAGTAACGTCACAATTTGCAGCCCTGTGGCCTAGTGATCAGAGATGATCATATGATCAGTCTTTACTTTTTCATTGGGAGGCTTCGGACCAAGCAGAGCGGTAGAGCACCTACAGTACACGTATTGTTAAACTACAGCAGACACGTCGACGGTTCTCatcacaaagtaaaaaaaacaacacacactagtcaTTCTTTTCCAGTGTGCAAAGTCCTCCTTGGGGGTAAATCAATGCCAAAACAAGGGACATTTAATCATTTGGTGAAAGATAAATGAAGGAAATACATATTTATACTACTAGAGAAGCAGCAATTCTGTTGGTAATGAATTaaaaagggcaaaaaaaaaaaaaaagatgaattcTAAATAATATTAAGTCACATATTGTGAGCACGTTTTGCATAGTGACTTGAAACAATACCATATATACAAAAGGTTTGCGGACGGCGTGACCTTTCAGGTTTACAGAGCCGTTAGTAAGCAATCGTAATTGATGTTTGGGCTGTTACTATGGTAACCATCCCGTAACAAGGAAGTAGTGGCGAAAAGGGCAAGTAAGTATTCAAATTCCTCAGCAGCTCTGCTGCTGTAAGCCAGTCAGATAAAATGTAAAAGGGCACCCATTGTAACGTTCGGGGGCTGTTCAAAAGGTGCAAGCAGCGTGCATTGTGGGATACACAAAGGACGACTCTGAGGACAGACAGTGCAGAAGACTGAGACAGATTGTAGGCTATACATTGTGTCCAGGTTGGAGGAATCGCATCTATACAGCTGTTGAAGTTGCAAATTAAGTTGGTGTGTTCATTCTTTGAACAGCCCGTTCCAAATAAtccaaatgtaaacaaaagttGATTCCACAATTAAACTTTGTACGGAGACAAATGTATTGTTTAGGCTAAAGACACATTATTCCTTGGTTTGAAGGTTTATACAATCTGTGTGATTTTAAGTTTACAGGAAGATATACTTTAAACAAATCCTGAATGGGGTTTCCCCAATCTttactcaaggtccacttactagctttttccAGAGCTCTCAATCGTGTAAAAACTGTTGCTTCCACGGTGAATTTGCACGCTCAAATTAAAGAGGTTTTTGATTGTATTTTAGGCTGAATAGCAGTAAAATATTAATGAGCTGTAGCATTCCCTGACACATATACTCACTACtcaatttaaaaagtaaagAGCTGAACTACAGTAGgtgattaatcaatcaatcaatcaatcaatcaatcaatcagcagCAAAGTAATCAGCAAATTTTGACAATCAAATCGATAATTAAAAAgggaatatatttgggtttggACAAAGCAAGCATTTTTAATAAGTCTACTCTGGCTTCTGTGCCTTTTTCACTGTCTTCTGTCTTTTTATGGACCCACTGATTAACCAAGAAAGTATTGGTCGGTCAGATTGATCGATTAGGAaagtaatcattagttgcagccctccGTTACTTCACTTGATACTGTTCAATTTAGGCTACAtgcagaccacacacacagtggcacgTCACACTGGGCCTTTTGTGTCATCGGTACATCAACTTCATTTGCATTACAAGGAAGAGGAAGACACCCATCGCATGTCAACGCACTGTAGGCCAGGGCTCTGATACAAGATATGCATGCTTGGATCATTTTTGAAATATCTGTGCGCTCACATACTTCACTCTTAATGCTATGTAAACATATTGATAGTCAGAAAAATACTATGTCTTTACATTATGTACAAAGTGTATCACTACGAGCGTATCACTAACCAGCGGAGTCACTGTTTTTCAGCTCGGTGGGATGGAATGTAGGAAAAGTTTCTACTCTCCTTTTTTACGATCGAGCAGTTACTACTGGTGATGGATCGGCTACATTAAGCTTTAAGGCAATGCACTGTCGGGAGTGTTGAGTGCTGCCATCAAGGCAATGGCACAATGCAGTTTGAAAGGCAAGTGGTGTGAAATGGTCAACAGGGCTGTATTTAGCCTCAGTCTGTGCCTCTCATGTGTTACCATTACATTTGAGTCATGGAGTTAAGAaatcagttcatctttaaaaagTAGTTCTTtgtatgaaaatataaaacaacacaatgtagGCTAACAGCTATATGGACATATAAAacagttttcattttgtttcacaTTGTACAAATCATTTTCGGCTACCATATTTCGATTAGGGGAAACATTAGCACAAATTGAGaaattaaagcaacaccaaagcacttttcctcttcggtccccctacaggttggaagggGAATTGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13262 lncRNA downstream 59 34722980 ~ 34723718 (-) True G9841
TU13259 lncRNA downstream 17715 34705858 ~ 34706062 (-) True G9838
TU13256 lncRNA downstream 38773 34680541 ~ 34685004 (-) False G9836
TU13257 lncRNA downstream 38773 34682170 ~ 34685004 (-) True G9836
TU13146 lncRNA downstream 191773 34530343 ~ 34532004 (-) True G9770
TU13292 lncRNA upstream 98518 34824632 ~ 34825454 (-) True G9867
TU13300 lncRNA upstream 121043 34847157 ~ 34847486 (-) True G9874
TU13430 lncRNA upstream 536931 35263045 ~ 35272052 (-) True G9967
TU13467 lncRNA upstream 677300 35403414 ~ 35404649 (-) True G9993
TU13464 lncRNA upstream 677350 35403464 ~ 35404649 (-) False G9993
XM_039824665.1 mRNA downstream 59557 34641204 ~ 34664220 (-) False fam193a
XM_039824733.1 mRNA downstream 59557 34641204 ~ 34664220 (-) False fam193a
XM_039824635.1 mRNA downstream 59557 34641204 ~ 34664220 (-) True fam193a
XM_039798458.1 mRNA downstream 162902 34556973 ~ 34560875 (-) True LOC120557822
XM_039804103.1 mRNA downstream 194679 34527053 ~ 34529098 (-) True LOC120561135
XM_039794278.1 mRNA upstream 215269 34941383 ~ 34974821 (-) True slkb
XM_039806999.1 mRNA upstream 490723 35216837 ~ 35220376 (-) True adra2c
XM_039797339.1 mRNA upstream 645903 35372017 ~ 35398518 (-) False dok7b
XM_039797330.1 mRNA upstream 645903 35372017 ~ 35398518 (-) True dok7b
XM_039816493.1 mRNA upstream 678701 35404815 ~ 35451211 (-) True rgs12b
TU13113 other downstream 266142 34452850 ~ 34457635 (-) True G9740
TU12854 other downstream 1205654 33497160 ~ 33518123 (-) False stox2a
TU12774 other downstream 1439697 33283078 ~ 33284080 (-) True G9488
TU12681 other downstream 1588857 33092460 ~ 33134920 (-) True G9418
TU13477 other upstream 672526 35398640 ~ 35400474 (-) True G9997
XR_005640911.1 other upstream 751117 35477231 ~ 35477360 (-) True LOC120569607
TU13574 other upstream 858356 35584470 ~ 35586582 (-) True LOC120572869
XR_005640401.1 other upstream 1217934 35944048 ~ 35969266 (-) False micall1a
XR_005640904.1 other upstream 1485014 36211128 ~ 36211215 (-) True LOC120569591

Expression Profile