RNA id: TU1344


Basic Information

Item Value
RNA id TU1344
length 1334
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G984
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 2880867 ~ 2882236 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAATGTATACGCCAAGGTTTCTCTCTCCTAGAAAGGGAGATGACCATGTGTGCACCCTCCTAAGTGTCTCAACAAACATCAAAATAACTCCTGCTTTATACTTGTTGTCCTCACACAATCCAGGCTATCCATTTCAGAGGAAtcactgttttttctctttttcatcaaacctcagtttttgcaagttcccacaatttcatcgcataaaattgcataaatatcccgcatattccatcgcattttttaagaaaacgtgccgcataatcaaggatttttgcctgcaacaatcacacaAAAACTCagtcgcatttttctggaaggactgtattGTGTGGCTCTAGGATAAAATTACAAAGTAGAGACATTATTGTTTACTATGAAGGAAATGATTTGGgtaaatgccatattttcatttagaatctttttaattttatttgggaAGTTTTTTATCCATAAATGTAAAcggtctgaaagaaaaccgaatattCACCAATTTCAAAATGACAAAGAACTGACACATAAGAAAGCCATAtggactctgaacatttacaatgccCTTCAACCTCTTGGATGTAAATATCAAGCGCCCCTTTTCCATGTCTGTATGTTTCTCTACTGGAATAATAACGTTTTTtgaaagcaaaaaacaaaaaacaaaaatacttgaAACATTTCAACTTCCTTCCAACGTATTCAAAATCaactttattctgaaaatacagCAGCACTTCCTGTGTGAGGCGTTGGATGACCAGCTGCTGCAGAGTctgtccatatatatatatatatatatatatatatatacacatacatacacatatatatatatggagtcTGTCACATGATGAGAAACAAAGTAAACAGGGAGTCCATTAAATCATCACAATGAAGTCACGGCAGACAGaggagtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtttgtgtgtgtgtgtgtgtgtgtatcattcCTCTctaggtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttatcactcctctctaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatcagtcctctctaggtgtgtgtgtgtgtgtccaggctgATGACCTGCAGCTCTGTCAGGTTGTTGCTGCTCTGCTGACTGATCACCATCTGAAACAACAAGATAtaccctaataataataataataataataataataataataataataacaataataataacaataacaataataacaacaacaacaagatataccctaataataataatactactaataat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1340 lncRNA downstream 195 2879059 ~ 2880672 (-) True G982
TU1328 lncRNA downstream 4608 2859616 ~ 2876259 (-) True G975
TU1333 lncRNA downstream 5732 2874120 ~ 2875135 (-) False G979
TU1334 lncRNA downstream 5732 2874120 ~ 2875135 (-) True G979
TU1335 lncRNA downstream 5732 2874120 ~ 2875135 (-) False G979
TU1352 lncRNA upstream 6881 2889117 ~ 2891073 (-) True G989
TU1363 lncRNA upstream 57148 2939384 ~ 2939638 (-) True G1000
TU1364 lncRNA upstream 58456 2940692 ~ 2940943 (-) True G1001
TU1370 lncRNA upstream 90126 2972362 ~ 2972567 (-) True G1007
TU1374 lncRNA upstream 101027 2983263 ~ 2991682 (-) True G1010
XM_039812537.1 mRNA downstream 83715 2738444 ~ 2797152 (-) False LOC120566216
XM_039812536.1 mRNA downstream 83715 2759662 ~ 2797152 (-) True LOC120566216
XM_039812529.1 mRNA downstream 147589 2716457 ~ 2733278 (-) True LOC120566206
XM_039812477.1 mRNA downstream 187224 2689977 ~ 2693643 (-) False zgc:110222
XM_039816273.1 mRNA upstream 18910 2901146 ~ 2911531 (-) True soul4
XM_039798424.1 mRNA upstream 217433 3099669 ~ 3107278 (-) True gemin6
XM_039788009.1 mRNA upstream 350388 3232624 ~ 3241497 (-) True LOC120550954
XM_039787625.1 mRNA upstream 387286 3269522 ~ 3274443 (-) False LOC120550734
XM_039787542.1 mRNA upstream 387286 3269522 ~ 3274443 (-) True LOC120550734
TU1327 other downstream 21565 2858496 ~ 2859302 (-) True G974
TU905 other downstream 830483 2049069 ~ 2050384 (-) True G670
XR_005640399.1 other downstream 1131175 1733546 ~ 1749692 (-) False LOC120566421
TU785 other downstream 1398964 1473756 ~ 1481903 (-) False stab2
TU761 other downstream 1520394 1359664 ~ 1360473 (-) True G565
TU1366 other upstream 81504 2963740 ~ 2964320 (-) True G1003
TU1371 other upstream 93002 2975238 ~ 2978115 (-) True G1008
TU1552 other upstream 526585 3408821 ~ 3410272 (-) True LOC120551303
unassigned_transcript_1 other upstream 544714 3426950 ~ 3427022 (-) True trnak-uuu
TU1725 other upstream 698982 3581218 ~ 3648230 (-) True G1240

Expression Profile