RNA id: TU13477


Basic Information

Item Value
RNA id TU13477
length 1835
RNA type TUCP
GC content 0.39
exon number 1
gene id G9997
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 35398640 ~ 35400474 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aagaggaggaggaggaggaggaggtggtggtttCAAAATGCCCAGAAGAAAAACATCTTCCAAgcccatccctccctctccttctcctcctcctattCCTCCACCACGGCCTCCTCTTCGCTCGCGTCGCAAATCAAAATCACCTTCGTCCCGCTCTAACCACTCGACCCCAAAACGAGCCTTGGATTTGGACGAAATCGGGACTACTATCCCAGAAGACAGCAAGCAAACCGGCCGAGGGTCCCGAGACCTAAGGGGCTCCCAGGGTTCAGAGCTGGACAGGAAGTGGGAGGGTGTGGCCTTGGAGCTGCATTGCCGTGGCAGCAGGATGAGGTCTGCAGTGTACCAGACTTCAGACTTGCCCTCTATGGTCAAAGCCAAGAGACCGTTGGAGCAGAGTGAAGGCAAGGGGCAGATAGACCGGAGTAAATGGAAAGCAACCTTTGTTTGAGTAGCCTGATGTTTAGCTGCTCCACGGAGTGCCTGGCCCGCTGACGTCGTCTATGTGACTCTGACCACACTGATTGTGTCTGCAGCAGCTGGAACATCTGTCTAGCTTTCAAGTTGAGGCAAAGGGCTCAGTGACAACTGACCAGCTGCTCCCAGACTGTATACCGAGGGCTGCTATTAGAAGATAACAGGCTGAGATTAATCTAATGCTGTGTCCCAGTTCCATACTACATCATTCTAACTGTACTGTGCAGGGGTGGAAAGTCATGTGTTCACACAAGTTACTGTGCAATTTTGAGGGACTTGTTTTGGACATTGAATGCTACTTTGTACtcttactccattacatttcagaggaaaatattgtactttttactccactcaGTTTCACAGctattattacaaacaaaacattttgccTTATAAAAGATAAGGCATGTTTAGTTGAAAATGCCCATTACAGAAAACCCCCAAAACAATGAAATCTTATTTAGCAGTCAAATTGTGAAGGCATTACAAAGTCACAAGCTGATTGATGTCTGCTCAGATTTTGAaagataactttattaatatgttGTAGCCTATATTAACTGCAAAAACAGCATCTACAGAATTCCTATACAGAATGTGTAACAAAGAATTGGGACACAGCAAAGCACTTCCTGGCCTAGCTGAAGTTGTGCCCATGCAGGAGAATAGCCTACTTGTAACACCAGTAGTTTTTTGGCTCTGTAGGttgtaaatctgtaaattaaattaaagtgtCACTTCAAGGATTCAGTATTTGCTTTTCCATAAAGTTGGAAAACTTGCAAACAGCAGCAGAGGCTGAAATATTCTTTCAGTCCTCATGTTGGAACATACGTTTCCCCATAATGCAACTTAACAGCATCTTGCATTAGGCCATCCCTgccatgatgacatcatcagggttattttctcagTCTTGACCAAACTCCTCCAGAGCCAGCAGAAGACATTATACATCTTGTTTTCACAAACTCAGTATGTCAACCACCTGCATTACaattaaatatggacattttGAAAAGGGAACCCTGAAACATTGTCAGCTGTCTGCATTTCTTTGGATAACATAATAACGGCCAGACTCCGAGATAAGTGTTCCTGGCACCAGCTAGTTGATGACATTCTCCTGTTAATTGCCCCTGAACTTACAGAGGCCCTGGAGGTAATACCACCCTGAAAACATCCAGTCCTGAGTCAAGTGCCTAAGAGCAACGCAAGGATTTTTATCACAATGGACCTCTGAGACAACAGTGAATCAGTAAAACCAGCAGGACTGCTCTATTCCACTTTTGCCCTCAGGATGTGCTCATTCAGTGGACATATGGGACATATGTTCACATAATAAAGTATTTTCT

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04114 Oocyte meiosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13430 lncRNA downstream 126588 35263045 ~ 35272052 (-) True G9967
TU13300 lncRNA downstream 551154 34847157 ~ 34847486 (-) True G9874
TU13292 lncRNA downstream 573186 34824632 ~ 34825454 (-) True G9867
TU13264 lncRNA downstream 672526 34723777 ~ 34726114 (-) True G9842
TU13262 lncRNA downstream 674922 34722980 ~ 34723718 (-) True G9841
TU13467 lncRNA upstream 2940 35403414 ~ 35404649 (-) True G9993
TU13464 lncRNA upstream 2990 35403464 ~ 35404649 (-) False G9993
TU13465 lncRNA upstream 3204 35403678 ~ 35404649 (-) False G9993
TU13476 lncRNA upstream 46454 35446928 ~ 35447270 (-) False rgs12b
TU13560 lncRNA upstream 157074 35557548 ~ 35558158 (-) True G10061
XM_039797339.1 mRNA downstream 122 35372017 ~ 35398518 (-) False dok7b
XM_039797330.1 mRNA downstream 122 35372017 ~ 35398518 (-) True dok7b
XM_039806999.1 mRNA downstream 178264 35216837 ~ 35220376 (-) True adra2c
XM_039794278.1 mRNA downstream 423819 34941383 ~ 34974821 (-) True slkb
XM_039824665.1 mRNA downstream 734420 34641204 ~ 34664220 (-) False fam193a
XM_039816493.1 mRNA upstream 4341 35404815 ~ 35451211 (-) True rgs12b
XM_039816470.1 mRNA upstream 56465 35456939 ~ 35492359 (-) False htt
XM_039816420.1 mRNA upstream 56465 35456939 ~ 35492359 (-) False htt
XM_039816398.1 mRNA upstream 56465 35456939 ~ 35492359 (-) False htt
XM_039816389.1 mRNA upstream 56465 35456939 ~ 35492359 (-) True htt
TU13113 other downstream 941005 34452850 ~ 34457635 (-) True G9740
TU12854 other downstream 1880517 33497160 ~ 33518123 (-) False stox2a
TU12774 other downstream 2114560 33283078 ~ 33284080 (-) True G9488
TU12680 other downstream 2263720 33092460 ~ 33134920 (-) False G9418
XR_005640911.1 other upstream 76757 35477231 ~ 35477360 (-) True LOC120569607
TU13574 other upstream 183996 35584470 ~ 35586582 (-) True LOC120572869
XR_005640401.1 other upstream 543574 35944048 ~ 35969266 (-) False micall1a
XR_005640904.1 other upstream 810654 36211128 ~ 36211215 (-) True LOC120569591
XR_005640910.1 other upstream 812072 36212546 ~ 36212627 (-) True LOC120569604

Expression Profile