RNA id: TU13574


Basic Information

Item Value
RNA id TU13574
length 1196
RNA type TUCP
GC content 0.41
exon number 3
gene id LOC120572869
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 35584470 ~ 35586613 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCCATACAACAAAACCAGGGTCTCTGCTGCAAAATACAGCCAAGAGCAGGACtgagctgcagacagacaggggcaGGTCAGGGGGCTGTTGGTGTACAAGTCGGCCAGTCACGCAAACATTTCTTTGCTTATATTATTTGGGTTGGATTTGTCTGTGTTGTGCTATATCTCGAATGATGGCCAGCAACAAGGAGACCAGACCGCTTGATACCATGACAGTAGCTGCCCCAGAGGAAACTCAGGGTGATAATGATACAAGGTCCagacagaaaaaagaagagaaactgaTCGTGACAGCCTGGCAAAGCATGTCCTCAGCTCTGCGGCAGCTCAGTCTGTGTAAGGACTCCAGAGCTCCAGGCCCGGCTCAGTCTTTCCTGGCCAAGCAGAGGCAATCCACCCAGGCCAGGAGGGCGCTCTCCCCCCGGCTGCAGCCCAGGTAGGAGCCTCCATCGGCAGGGAGAAATGGAGGAGTGCAGCCCACTCATGGGCATGATGAAAAGCAAGATTGTGGAAGGTGTGAATTTCTTCGAGTCACCGTCTGTGCTCTATTTGGTTGGCTGCTATCGCCCCCTGCTGGTCATTGTTGGAACTGAAGTGATATTTGTGACTTGATATAATATCTAGTAGTGTCATAAAttagttttcttttagttttataCCTAAATGTGTGCTTGTCAATAATCACCAGAGTATCTGCTCCATTTATCATTGTAtaatatttatacatttatttgtgCAGGTGAGATTCAATTTCCTTTAGAAATAATGCAAAACATTGACTATTCATTTTGTCATTAATGTTAGACGGTTATGTTATCTCATTCATTTAATtcaatatttgttttaaattaagcTTTAGAATACAACAGATAATACATTAGAAAGCATTCTATTTAAAGGGACATTTTATTaatcaaagaaaataaagtaaacaaaGAAAATTGTCACCTATTGTGTCTGTTCATTTTAGCACCATTTGTTCAGTCCAAACTTTTGTTAATCCTCTCTACTAGACTTCAGTAAACAtaggcaatatattgatattctaCAAAATAATGTGCAGATCATTTTTCCTTTAAACACACTCtttgattttaataaacaattggtCTCCGTTTCATCTCCTCTGTATACATGTAGTTTTAAAaggtttagcctagcttagcaccaAGACTGAAAGGACGGGTAAAC

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13562 lncRNA downstream 11026 35562913 ~ 35573444 (-) True G10063
TU13565 lncRNA downstream 11026 35570906 ~ 35573444 (-) False G10063
TU13563 lncRNA downstream 16554 35562913 ~ 35567916 (-) False G10063
TU13560 lncRNA downstream 26312 35557548 ~ 35558158 (-) True G10061
TU13476 lncRNA downstream 137200 35446928 ~ 35447270 (-) False rgs12b
TU13606 lncRNA upstream 65390 35651972 ~ 35652171 (-) True G10091
TU13682 lncRNA upstream 112050 35698632 ~ 35702592 (-) True G10143
TU13721 lncRNA upstream 213039 35799621 ~ 35843137 (-) True G10174
TU13750 lncRNA upstream 334273 35920855 ~ 35921076 (-) True G10198
TU13752 lncRNA upstream 342167 35928749 ~ 35929260 (-) True G10200
XM_039809913.1 mRNA downstream 42387 35493057 ~ 35542083 (-) False grk4
XM_039809919.1 mRNA downstream 42387 35493057 ~ 35542083 (-) True grk4
XM_039809928.1 mRNA downstream 43471 35493057 ~ 35540999 (-) False grk4
XM_039816470.1 mRNA downstream 92111 35456939 ~ 35492359 (-) False htt
XM_039816420.1 mRNA downstream 92111 35456939 ~ 35492359 (-) False htt
XM_039796360.1 mRNA upstream 37322 35623904 ~ 35628892 (-) True prdx2
XM_039795211.1 mRNA upstream 101907 35688489 ~ 35691028 (-) False LOC120555967
XM_039795205.1 mRNA upstream 101907 35688489 ~ 35691028 (-) True LOC120555967
XM_039809084.1 mRNA upstream 146386 35732968 ~ 35739670 (-) False LOC120564231
XM_039809074.1 mRNA upstream 146386 35732968 ~ 35739670 (-) True LOC120564231
XR_005640911.1 other downstream 107110 35477231 ~ 35477360 (-) True LOC120569607
TU13477 other downstream 183996 35398640 ~ 35400474 (-) True G9997
TU13113 other downstream 1126835 34452850 ~ 34457635 (-) True G9740
TU12854 other downstream 2066347 33497160 ~ 33518123 (-) False stox2a
TU12774 other downstream 2300390 33283078 ~ 33284080 (-) True G9488
XR_005640401.1 other upstream 357466 35944048 ~ 35969266 (-) False micall1a
XR_005640904.1 other upstream 624546 36211128 ~ 36211215 (-) True LOC120569591
XR_005640910.1 other upstream 625964 36212546 ~ 36212627 (-) True LOC120569604
TU13981 other upstream 648201 36234783 ~ 36243319 (-) False slc5a10
XR_005640907.1 other upstream 695425 36282007 ~ 36282095 (-) True LOC120569597

Expression Profile