RNA id: TU13752


Basic Information

Item Value
RNA id TU13752
length 512
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G10200
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 35928749 ~ 35929260 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttggaatatcttctttaaatttagctatagcactgtcagataagcatctggtgtaggagcttttatctaatttaatataatcaggtagtaagaattcgaaagtgattaaagaatgatctgataataccgaattctgcgaaaatattattaaatcctcaatttcaataccatatgccagcacaaggtcgagggtgtggttaaaacagtgcgtcgccttgtgcacactctgactgaaaccgattgaatccagtaatgagttgaaagcagtactaaggctgtcattgtcaacgtccacatggatattaaaatcacctacaagaagtacttggtctgatttaaggactaaacatgataaaaactctgagaattcagataaaaattcagaatacggacctggagccctgtaaataacaacgaatataattggctgtaatgttttccattttggatgttgaagattaagaacaagactttcaaatgagttataatgtaatttaggtttaggagtaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13750 lncRNA downstream 7673 35920855 ~ 35921076 (-) True G10198
TU13721 lncRNA downstream 85612 35799621 ~ 35843137 (-) True G10174
TU13682 lncRNA downstream 226157 35698632 ~ 35702592 (-) True G10143
TU13606 lncRNA downstream 276578 35651972 ~ 35652171 (-) True G10091
TU13565 lncRNA downstream 355305 35570906 ~ 35573444 (-) False G10063
TU13754 lncRNA upstream 2339 35931599 ~ 35931855 (-) True G10202
TU13960 lncRNA upstream 232756 36162016 ~ 36166879 (-) False G10349
TU13961 lncRNA upstream 232756 36162016 ~ 36166879 (-) True G10349
TU13978 lncRNA upstream 305045 36234305 ~ 36234691 (-) False slc5a10
TU13988 lncRNA upstream 347597 36276857 ~ 36280693 (-) False LOC120547992
XM_039807596.1 mRNA downstream 80288 35844287 ~ 35848461 (-) True klf1
XM_039807405.1 mRNA downstream 97450 35828755 ~ 35831299 (-) True LOC120563277
XM_039807489.1 mRNA downstream 97460 35828755 ~ 35831289 (-) False LOC120563277
XM_039807351.1 mRNA downstream 103581 35815772 ~ 35825168 (-) True nfil3-5
XM_039809074.1 mRNA downstream 189079 35732968 ~ 35739670 (-) True LOC120564231
XM_039812943.1 mRNA upstream 15870 35945130 ~ 35969266 (-) False micall1a
XM_039812818.1 mRNA upstream 15870 35945130 ~ 35969266 (-) True micall1a
XM_039813314.1 mRNA upstream 54986 35984246 ~ 35993088 (-) True LOC120566690
XM_039812701.1 mRNA upstream 92918 36022178 ~ 36041403 (-) False LOC120566152
XM_039812622.1 mRNA upstream 92918 36022178 ~ 36041403 (-) False LOC120566152
TU13574 other downstream 342167 35584470 ~ 35586582 (-) True LOC120572869
XR_005640911.1 other downstream 451389 35477231 ~ 35477360 (-) True LOC120569607
TU13477 other downstream 528275 35398640 ~ 35400474 (-) True G9997
TU13113 other downstream 1471114 34452850 ~ 34457635 (-) True G9740
TU12854 other downstream 2410626 33497160 ~ 33518123 (-) False stox2a
XR_005640401.1 other upstream 14788 35944048 ~ 35969266 (-) False micall1a
XR_005640904.1 other upstream 281868 36211128 ~ 36211215 (-) True LOC120569591
XR_005640910.1 other upstream 283286 36212546 ~ 36212627 (-) True LOC120569604
TU13981 other upstream 305523 36234783 ~ 36243319 (-) False slc5a10
XR_005640907.1 other upstream 352747 36282007 ~ 36282095 (-) True LOC120569597

Expression Profile