RNA id: TU13754



Basic Information


Item Value
RNA id TU13754
length 257
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G10202
representative True

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 35931599 ~ 35931855 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


tatatcttTGTCCTATCTGACCCAAAAAATACCCAGTTACTCACTTCCCAAAAGTCAgaattagtttcatttattcTCTTTAGTTAAGAGAATGATTTCGCCAATTATTCATTACTTAATTCGTTTAGCAACAGTTGCTTGTTTAGAatgtttgttcaaaaccttgaattcgcaatccaattgtaattaatcaattttatCTTACCGTGCTGCTTGAAATCTCTCCCTGTTCGTTTTTGACGGAGTGGAAAACAGTC

Function


GO: NA

KEGG:

id description
ko00140 Steroid hormone biosynthesis
ko04913 Ovarian steroidogenesis
ko04927 Cortisol synthesis and secretion

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU13752 lncRNA downstream 2339 35928749 ~ 35929260 (-) True G10200
TU13750 lncRNA downstream 10523 35920855 ~ 35921076 (-) True G10198
TU13721 lncRNA downstream 88462 35799621 ~ 35843137 (-) True G10174
TU13682 lncRNA downstream 229007 35698632 ~ 35702592 (-) True G10143
TU13606 lncRNA downstream 279428 35651972 ~ 35652171 (-) True G10091
TU13960 lncRNA upstream 230161 36162016 ~ 36166879 (-) False G10349
TU13961 lncRNA upstream 230161 36162016 ~ 36166879 (-) True G10349
TU13978 lncRNA upstream 302450 36234305 ~ 36234691 (-) False slc5a10
TU13988 lncRNA upstream 345002 36276857 ~ 36280693 (-) False LOC120547992
XR_005637139.1 lncRNA upstream 349711 36281566 ~ 36284261 (-) True LOC120548049
XM_039807596.1 mRNA downstream 83138 35844287 ~ 35848461 (-) True klf1
XM_039807405.1 mRNA downstream 100300 35828755 ~ 35831299 (-) True LOC120563277
XM_039807489.1 mRNA downstream 100310 35828755 ~ 35831289 (-) False LOC120563277
XM_039807351.1 mRNA downstream 106431 35815772 ~ 35825168 (-) True nfil3-5
XM_039809074.1 mRNA downstream 191929 35732968 ~ 35739670 (-) True LOC120564231
XM_039812943.1 mRNA upstream 13275 35945130 ~ 35969266 (-) False micall1a
XM_039812818.1 mRNA upstream 13275 35945130 ~ 35969266 (-) True micall1a
XM_039813314.1 mRNA upstream 52391 35984246 ~ 35993088 (-) True LOC120566690
XM_039812701.1 mRNA upstream 90323 36022178 ~ 36041403 (-) False LOC120566152
XM_039812622.1 mRNA upstream 90323 36022178 ~ 36041403 (-) False LOC120566152
TU13574 other downstream 345017 35584470 ~ 35586582 (-) True LOC120572869
XR_005640911.1 other downstream 454239 35477231 ~ 35477360 (-) True LOC120569607
TU13477 other downstream 531125 35398640 ~ 35400474 (-) True G9997
TU13113 other downstream 1473964 34452850 ~ 34457635 (-) True G9740
TU12854 other downstream 2413476 33497160 ~ 33518123 (-) False stox2a
XR_005640401.1 other upstream 12193 35944048 ~ 35969266 (-) False micall1a
XR_005640904.1 other upstream 279273 36211128 ~ 36211215 (-) True LOC120569591
XR_005640910.1 other upstream 280691 36212546 ~ 36212627 (-) True LOC120569604
TU13981 other upstream 302928 36234783 ~ 36243319 (-) False slc5a10
XR_005640907.1 other upstream 350152 36282007 ~ 36282095 (-) True LOC120569597

Expression Profile