RNA id: TU14


Basic Information

Item Value
RNA id TU14
length 897
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G4
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 68208 ~ 69304 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtttaggaaaagaagaaccggttgggttcaggtaaagaagaactggttgggtttaggtaaagaagaaccggttgggtttaggaaaagaagaaccggttgggtttaggaaaagaagaactggttgggttcaggtaaagaagaaccggttgggtttaggaaaagaagaaccggttgggtttaggaaaagaagaactggttgggtttaggtaaagaagaactggttgggtttaggaaaagagcCCGCCTccacggttgtgattggtgcctcgattttggggacattggaaatgggtttgaatgggctcttcgccagactgacctgcagagcagaatctcaaatttgccggacgTTGGTCAGGGTCTACCCAGGCTAACAGggctgggtttaggaaaagaagaaccagtTTGGTGTATATTTGGCAGGAGAGACTTGTAAGCATCTCTGACAAGCGCGCAATGAAACATCAACGGAGATATTAAATGGGGAAAATTCAGAGCCTTTTAAAAAGTGTGCGCTCATTGTTGATctctaaatataaatatatatataccatcCAGAACAGCACATGATAAAGGAACAGTTATGCTCAGGGTTTGGGttgttttacataaaaaaacaaacatattttaaaactCTGAAAGTAATGAAACCATCCAAACTGTTCAAATCTGAAGAACGTGATTTGAGCTCTTGACCTTTCTGTGGCAACGTGAGCTGAACTGAACTCTATATTTGTAGCAGACGCAGGTTTTCTAGGTTGTTTGTACAGAGGAGGTCGCGTTGCGTTGCTTTgcgttgtttgtgtgtttgtgttgttgtgacgTGTCGACACAGAACGCAACActttaataaaatgaattacAACAACACGCCAAGCTGCTCTTGTCGTCACTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33 lncRNA upstream 1708 59996 ~ 66500 (+) True LOC120559874
TU24 lncRNA downstream 2780 72084 ~ 73669 (+) True G11
TU17 lncRNA downstream 79754 149058 ~ 266723 (+) True G7
TU5 lncRNA downstream 80135 149439 ~ 237739 (+) False fbxo3
TU43 lncRNA downstream 98499 167803 ~ 199248 (+) False G25
TU44 lncRNA downstream 98499 167803 ~ 199248 (+) True G25
XM_039801942.1 mRNA upstream 3047 854 ~ 65161 (+) False LOC120559874
XM_039815494.1 mRNA downstream 80135 149439 ~ 149842 (+) False fbxo3
XM_039802163.1 mRNA downstream 89087 158391 ~ 182303 (+) True LOC120560058
XM_039802184.1 mRNA downstream 131109 200413 ~ 224596 (+) False LOC120560073
XM_039812604.1 mRNA downstream 221948 291252 ~ 319824 (+) False rrp36
XM_039812597.1 mRNA downstream 227553 296857 ~ 319824 (+) False rrp36
TU6 other downstream 700 70004 ~ 150980 (+) True fbxo3
TU28 other downstream 2780 72084 ~ 72906 (+) False G11
TU13 other downstream 105829 175133 ~ 177062 (+) False LOC120560058
TU56 other downstream 141931 211235 ~ 214550 (+) True LOC120560073
TU279 other downstream 408667 477971 ~ 481890 (+) True G184

Expression Profile