RNA id: TU1475


Basic Information

Item Value
RNA id TU1475
length 852
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G1098
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 3325615 ~ 3384416 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGTACAGTTTGATTGAGTCAGTtttgtCAGAATTTCTGTGTTGTACATTTCTTCAGAAACACCATAAAACAGTCACATTTATTCATCATAACATAAGTACAGTTTGATTGAGTCAGTTTTGTCTGAGGGTCACCGCTgtaataaccccccccccccttcagcAGATACTGCCCGGGTGCCTTTGAGCCAGGCATGGCGCTGCAGACTGAAACCATCTCTTCAGTACTAACAGAACTGTCCGTTTTTCTTCATAAAATGTCCGTTGgctttttattagttatttgatgctataaaaacagGCTGAAACCTCATTATTGACAGCTGGGACTGACTCCTGATTGGCCCTGCGGGTGTGTGGGCGGGACTTGGATTCCACAGCAAAATATTTCAACTTTTGTCTGAAATcttcagactttttttcttgtaaTATTCTGACATTTATTCTCCAACTAGAacgagtttttttttcaaaaacattttctgacttgttttgttttcctcctcCTTATAGTCCTGAGCCCGAATCTTAAAATAATCCAAGGTTTACATTTTCCAAATCAGACTATTTTTcctcaaaatataattttttttctgttctcagcGTCTCAGGCGGAGGAAGAAGGCGTGGCGGCACTCGGTGCTCTCCACCGGATAGTATTTATCGTAGAAGTCCAGGATGTATTCCTCCGCTTTGAAACCAAACTTCTGATAAAGCAGCATGGCGGGATTACTGGCCGACACGTGCAGCGTCACGTCCTTCCCCATGCAcgtctggaacacacacacacacgcacacacaaacatcaggtctgagacacacaaacatcacgGAGATATAGCCTGAATCTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1469 lncRNA upstream 53384 3271013 ~ 3272231 (+) True G1093
TU1417 lncRNA upstream 190254 3096362 ~ 3135361 (+) True G1045
TU1311 lncRNA upstream 242479 3082231 ~ 3083136 (+) True G959
TU1307 lncRNA upstream 245425 3079048 ~ 3080190 (+) False LOC120567073
TU1548 lncRNA downstream 15651 3400067 ~ 3400331 (+) True G1145
TU1549 lncRNA downstream 16488 3400904 ~ 3403698 (+) True G1146
TU1561 lncRNA downstream 51528 3435944 ~ 3442178 (+) True G1156
TU1610 lncRNA downstream 107528 3491944 ~ 3494763 (+) True G1189
TU1612 lncRNA downstream 107528 3491944 ~ 3494763 (+) False G1189
XM_039805490.1 mRNA upstream 65857 3175601 ~ 3259758 (+) True dzank1
XM_039798404.1 mRNA upstream 166323 3157203 ~ 3159292 (+) True LOC120557788
XM_039798413.1 mRNA upstream 166323 3157203 ~ 3159292 (+) False LOC120557788
XM_039798356.1 mRNA upstream 168477 3128089 ~ 3157138 (+) False LOC120557752
XM_039805633.1 mRNA downstream 29009 3413425 ~ 3448493 (+) True rrbp1b
XM_039794054.1 mRNA downstream 83731 3468147 ~ 3478516 (+) False LOC120555387
XM_039794067.1 mRNA downstream 103927 3488343 ~ 3490010 (+) True LOC120555395
XM_039805718.1 mRNA downstream 180306 3564722 ~ 3568010 (+) True LOC120562172
XM_039808845.1 mRNA downstream 262608 3647024 ~ 3655642 (+) True psen2
TU1461 other upstream 65857 3255917 ~ 3259758 (+) False dzank1
XR_005639016.1 other upstream 168477 3128089 ~ 3157138 (+) True LOC120557752
XR_005639017.1 other upstream 168477 3128089 ~ 3157138 (+) False LOC120557752
XR_005640520.1 other upstream 254142 3068613 ~ 3071473 (+) True LOC120567079
TU1184 other upstream 624640 2626243 ~ 2700975 (+) True G879
TU1593 other downstream 83708 3468124 ~ 3480130 (+) True LOC120555387
TU1635 other downstream 113345 3497761 ~ 3499104 (+) True G1191
TU1916 other downstream 1048960 4433376 ~ 4436024 (+) False pex6
TU2062 other downstream 1070791 4455207 ~ 4460404 (+) True G1487
TU2210 other downstream 1593367 4977783 ~ 5038714 (+) False G1600

Expression Profile