RNA id: TU1548


Basic Information

Item Value
RNA id TU1548
length 206
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G1145
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 3400067 ~ 3400331 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caaacatctcgtaaacatctcaggtaaacatcaggcaaacatctcGTAAACATCTCAGGCAAACATCTCGTAAACATCTCAGGTAAACATCTCAGGCAAACAtctcaggcaaacatcaggcaaacatctcgtaaacatctcaggtaaacatcaggcaaacatctcgtaaacatctcaggtaaacatcaggcaaacatctcgtaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475 lncRNA upstream 15651 3325615 ~ 3384416 (+) True G1098
TU1476 lncRNA upstream 15651 3325615 ~ 3384416 (+) False G1098
XR_005637832.1 lncRNA upstream 58324 3339495 ~ 3341743 (+) True LOC120551115
TU1469 lncRNA upstream 127836 3271013 ~ 3272231 (+) True G1093
TU1417 lncRNA upstream 264706 3096362 ~ 3135361 (+) True G1045
TU1549 lncRNA downstream 573 3400904 ~ 3403698 (+) True G1146
TU1561 lncRNA downstream 35613 3435944 ~ 3442178 (+) True G1156
TU1610 lncRNA downstream 91613 3491944 ~ 3494763 (+) True G1189
TU1612 lncRNA downstream 91613 3491944 ~ 3494763 (+) False G1189
TU1634 lncRNA downstream 96275 3496606 ~ 3499104 (+) False G1191
XM_039787401.1 mRNA upstream 26926 3364816 ~ 3373141 (+) True LOC120550686
XM_039805490.1 mRNA upstream 140309 3175601 ~ 3259758 (+) True dzank1
XM_039798404.1 mRNA upstream 240775 3157203 ~ 3159292 (+) True LOC120557788
XM_039798413.1 mRNA upstream 240775 3157203 ~ 3159292 (+) False LOC120557788
XM_039798356.1 mRNA upstream 242929 3128089 ~ 3157138 (+) False LOC120557752
XM_039805633.1 mRNA downstream 13094 3413425 ~ 3448493 (+) True rrbp1b
XM_039794054.1 mRNA downstream 67816 3468147 ~ 3478516 (+) False LOC120555387
XM_039794067.1 mRNA downstream 88012 3488343 ~ 3490010 (+) True LOC120555395
XM_039805718.1 mRNA downstream 164391 3564722 ~ 3568010 (+) True LOC120562172
XM_039808845.1 mRNA downstream 246693 3647024 ~ 3655642 (+) True psen2
TU1461 other upstream 140309 3255917 ~ 3259758 (+) False dzank1
XR_005639016.1 other upstream 242929 3128089 ~ 3157138 (+) True LOC120557752
XR_005639017.1 other upstream 242929 3128089 ~ 3157138 (+) False LOC120557752
XR_005640520.1 other upstream 328594 3068613 ~ 3071473 (+) True LOC120567079
TU1184 other upstream 699092 2626243 ~ 2700975 (+) True G879
TU1593 other downstream 67793 3468124 ~ 3480130 (+) True LOC120555387
TU1635 other downstream 97430 3497761 ~ 3499104 (+) True G1191
TU1916 other downstream 1033045 4433376 ~ 4436024 (+) False pex6
TU2062 other downstream 1054876 4455207 ~ 4460404 (+) True G1487
TU2210 other downstream 1577452 4977783 ~ 5038714 (+) False G1600

Expression Profile