RNA id: TU1582


Basic Information

Item Value
RNA id TU1582
length 483
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1177
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 3454512 ~ 3454994 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gctgttgctaggctagcgcaagtcaacagtatctgctagcctgccaCTACCCTTGTACCCTTGCATCATCGTcttcaaagtcaaagtcaagaaACATCGGCATGGCTTTCAAACGTGGCCATAATACTATCTTGTTGATTCCTTCGTGCAATGTACTCTGCTTCTGTAGCAATGAATGACAATGGCAGGTAAATAACCTAGCGTGATTGTCATGGAAACCGGCTTTCTCAGTAGCCTAGGTAATATCACTCCGCCGCTGCTGTAGCTTATACTACCAACTACAGGGAACAAAGTATAACTATTGCAATGTGATGCAAgggtagttttatttctaacattattttatcaacagacatttacatcggtagtctggcgttataatttatttgcctcgGGTGTACTGTGGAGTGGGTAAGACTGTTTTTAAtggcaggctagcagatactgttgacttgcgctagcctagcatcagcgaactctgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1554 lncRNA downstream 45722 3408450 ~ 3408790 (-) True G1150
TU1553 lncRNA downstream 46541 3407764 ~ 3407971 (-) True G1149
TU1535 lncRNA downstream 66768 3386250 ~ 3387744 (-) False LOC120551253
XR_005637855.1 lncRNA downstream 66918 3386838 ~ 3387594 (-) True LOC120551253
XR_005637841.1 lncRNA downstream 108571 3343367 ~ 3345941 (-) True LOC120551162
XR_005640299.1 lncRNA upstream 8467 3463461 ~ 3464806 (-) True LOC120565864
TU1596 lncRNA upstream 15987 3470981 ~ 3480188 (-) True G1183
TU1607 lncRNA upstream 34045 3489039 ~ 3489305 (-) True G1187
TU1712 lncRNA upstream 37000 3491994 ~ 3494758 (-) False G1236
TU1714 lncRNA upstream 37000 3491994 ~ 3494758 (-) True G1236
XM_039788648.1 mRNA downstream 44217 3409052 ~ 3410295 (-) False LOC120551303
XM_039805597.1 mRNA downstream 54533 3383531 ~ 3399979 (-) True kat14
XM_039787877.1 mRNA downstream 72221 3351346 ~ 3382291 (-) True LOC120550893
XM_039788137.1 mRNA downstream 141463 3305469 ~ 3313049 (-) True LOC120551010
XM_039787747.1 mRNA downstream 168255 3279426 ~ 3286257 (-) True LOC120550828
XM_039794091.1 mRNA upstream 41785 3496779 ~ 3547230 (-) False LOC120555401
XM_039794086.1 mRNA upstream 41785 3496779 ~ 3547230 (-) False LOC120555401
XM_039794078.1 mRNA upstream 41785 3496779 ~ 3547230 (-) False LOC120555401
XM_039794117.1 mRNA upstream 41785 3496779 ~ 3544471 (-) False LOC120555401
XM_039794108.1 mRNA upstream 41785 3496779 ~ 3535656 (-) True LOC120555401
unassigned_transcript_1 other downstream 27490 3426950 ~ 3427022 (-) True trnak-uuu
TU1552 other downstream 44240 3408821 ~ 3410272 (-) True LOC120551303
TU1371 other downstream 476397 2975238 ~ 2978115 (-) True G1008
TU1366 other downstream 490192 2963740 ~ 2964320 (-) True G1003
TU1327 other downstream 595210 2858496 ~ 2859302 (-) True G974
TU1725 other upstream 126224 3581218 ~ 3648230 (-) True G1240
TU1727 other upstream 193694 3648688 ~ 3672538 (-) True G1242
TU2024 other upstream 890553 4345547 ~ 4346086 (-) True G1464
TU2240 other upstream 1287506 4742500 ~ 4756137 (-) True G1623
XR_005639982.1 other upstream 1319823 4774817 ~ 4783916 (-) True LOC120563598

Expression Profile