RNA id: TU16762


Basic Information

Item Value
RNA id TU16762
length 509
RNA type TUCP
GC content 0.48
exon number 4
gene id G12553
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 46416428 ~ 46417773 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cctcctcctccgaaGGATCTCTGGACTTGCTTGTCTCGCCGCAGAAAAATGGCCTCGTCACAGAAACGCTGCGCTCTCCTGCTGGTTGTTGTAGCTGCAGTTTGCATTCAGCTCTGTCAAGCTCAAGTCTCTATTGGACGCTGCTCATGTTCCGAAACAATCAAGTTCATCAGAGGCAATATGTCAGATTTCCTTGTCCTTGAAAGGCATCCTGGATGTGACAAAACTGAATTAATtgTAACCATGAACAATGCAGACAACTCCACCAAGAAATTCTGTATGAACACTGAGGGAAAGATGGCCAAGGCTTTTTTGAAATGCTGGGAAAGGATAAACAAAGACGAGAGCCGTAAGATGGAGTGCattgacaggaaaaaaaagtcagagtgaAAGTACAAGGGGGGGGCGGTATGCCTGAAAGTTATCCGGACCGGAGTCCCGGAGGTCACATGAAGACCGAGAATGCTGAGAGCAGAGCTTTCACTGAACCTCTGCACTGGAGAGGATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16741 lncRNA upstream 125360 46290741 ~ 46291068 (+) True G12537
XR_005639011.1 lncRNA upstream 130949 46283048 ~ 46285479 (+) True LOC120557712
TU16724 lncRNA upstream 147402 46268812 ~ 46269026 (+) True G12522
TU16678 lncRNA upstream 250680 46165530 ~ 46165748 (+) True G12485
TU16677 lncRNA upstream 252033 46164192 ~ 46164395 (+) True G12484
TU16768 lncRNA downstream 54905 46472678 ~ 46472913 (+) True G12559
TU16775 lncRNA downstream 63408 46481181 ~ 46481459 (+) True G12566
TU16777 lncRNA downstream 89291 46507064 ~ 46507393 (+) True G12568
XR_005640566.1 lncRNA downstream 100442 46518215 ~ 46522032 (+) True LOC120567408
TU16784 lncRNA downstream 126431 46544204 ~ 46544441 (+) True G12575
XM_039815239.1 mRNA upstream 15063 46392846 ~ 46401365 (+) True si:ch73-6k14.2
XM_039805647.1 mRNA upstream 42588 46346970 ~ 46373840 (+) True LOC120562127
XM_039798275.1 mRNA upstream 79095 46318376 ~ 46337333 (+) True LOC120557716
XM_039809380.1 mRNA upstream 315101 46080099 ~ 46101327 (+) True gstt1b
XM_039809414.1 mRNA upstream 337409 46068792 ~ 46079019 (+) True ddt
XM_039808768.1 mRNA downstream 428244 46846017 ~ 47125487 (+) True LOC120564084
XM_039808779.1 mRNA downstream 428244 46846017 ~ 47125487 (+) False LOC120564084
XM_039808795.1 mRNA downstream 428244 46846017 ~ 47120634 (+) False LOC120564084
XM_039776844.1 mRNA downstream 1783097 48200870 ~ 48202754 (+) True LOC120543662
XM_039776742.1 mRNA downstream 1796531 48214304 ~ 48296748 (+) False neurl1aa
unassigned_transcript_72 other upstream 208703 46207653 ~ 46207725 (+) True trnak-uuu_1
unassigned_transcript_71 other upstream 209424 46206932 ~ 46207004 (+) True trnat-ugu
TU16690 other upstream 246739 46166405 ~ 46169689 (+) True G12491
unassigned_transcript_69 other upstream 251875 46164482 ~ 46164553 (+) True trnae-cuc
TU16442 other upstream 770455 45638080 ~ 45645973 (+) True G12311
XR_005640059.1 other downstream 428244 46846017 ~ 47125487 (+) False LOC120564084
XR_005640058.1 other downstream 428244 46846017 ~ 47120976 (+) False LOC120564084
TU17111 other downstream 2011027 48428800 ~ 48487894 (+) True G12872
TU17110 other downstream 2011080 48428853 ~ 48488219 (+) False G12872
TU17112 other downstream 2067475 48485248 ~ 48486493 (+) False G12873

Expression Profile