RNA id: TU16800


Basic Information

Item Value
RNA id TU16800
length 294
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id LOC120562979
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 46613279 ~ 46614741 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCTTGGAGAGTTTGGCGATGTTGTGCGTAGCATGGACAACAAAATGGAAACTATGCAGCAACATTTCAGTGCCAATGTGTCTGTTGGAGAGCCACTGATGAGGCGGTCCAGGTTAACGTTACGCGTTACCTGAAAGCATCTGACCGTGAAGGCGGAAAAAGGCGCCGCACAGCTGAGAGGGACCCACAGCCGACCCCTTAAACCTAGGCTGACTACTGACACCCCCGCATCACTGACAACTGGAACACTTTCTTTATCCTGCAGTCAGTAACATCAAGAAGCCAGAAGTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16785 lncRNA upstream 57349 46556592 ~ 46557099 (+) True G12576
TU16784 lncRNA upstream 70007 46544204 ~ 46544441 (+) True G12575
XR_005640566.1 lncRNA upstream 92416 46518215 ~ 46522032 (+) True LOC120567408
TU16777 lncRNA upstream 107055 46507064 ~ 46507393 (+) True G12568
TU16775 lncRNA upstream 132989 46481181 ~ 46481459 (+) True G12566
TU16801 lncRNA downstream 182 46614923 ~ 46615279 (+) True G12592
TU16811 lncRNA downstream 88284 46703025 ~ 46722961 (+) True G12601
TU16821 lncRNA downstream 133938 46748679 ~ 46749688 (+) True G12609
TU16819 lncRNA downstream 133945 46748686 ~ 46749688 (+) False G12609
TU16828 lncRNA downstream 170553 46785294 ~ 46785694 (+) True G12615
XM_039815239.1 mRNA upstream 213083 46392846 ~ 46401365 (+) True si:ch73-6k14.2
XM_039805647.1 mRNA upstream 240608 46346970 ~ 46373840 (+) True LOC120562127
XM_039798275.1 mRNA upstream 277115 46318376 ~ 46337333 (+) True LOC120557716
XM_039809380.1 mRNA upstream 513121 46080099 ~ 46101327 (+) True gstt1b
XM_039809414.1 mRNA upstream 535429 46068792 ~ 46079019 (+) True ddt
XM_039808768.1 mRNA downstream 231276 46846017 ~ 47125487 (+) True LOC120564084
XM_039808779.1 mRNA downstream 231276 46846017 ~ 47125487 (+) False LOC120564084
XM_039808795.1 mRNA downstream 231276 46846017 ~ 47120634 (+) False LOC120564084
XM_039776844.1 mRNA downstream 1586129 48200870 ~ 48202754 (+) True LOC120543662
XM_039776742.1 mRNA downstream 1599563 48214304 ~ 48296748 (+) False neurl1aa
TU16762 other upstream 196675 46416428 ~ 46417773 (+) True G12553
unassigned_transcript_72 other upstream 406723 46207653 ~ 46207725 (+) True trnak-uuu_1
unassigned_transcript_71 other upstream 407444 46206932 ~ 46207004 (+) True trnat-ugu
TU16690 other upstream 444759 46166405 ~ 46169689 (+) True G12491
unassigned_transcript_69 other upstream 449895 46164482 ~ 46164553 (+) True trnae-cuc
XR_005640059.1 other downstream 231276 46846017 ~ 47125487 (+) False LOC120564084
XR_005640058.1 other downstream 231276 46846017 ~ 47120976 (+) False LOC120564084
TU17111 other downstream 1814059 48428800 ~ 48487894 (+) True G12872
TU17110 other downstream 1814112 48428853 ~ 48488219 (+) False G12872
TU17112 other downstream 1870507 48485248 ~ 48486493 (+) False G12873

Expression Profile