RNA id: TU16828


Basic Information

Item Value
RNA id TU16828
length 401
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G12615
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 46785294 ~ 46785694 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cactatctgctagctgcctgtctcctgaacacactgtaaaaaacatctcctcactatctgctagctgcctgtctcctgaacacactgtaaaaaatatctcctcactatctgctagctgcctgtcccctgaacacactgtaaaaaatatctcctcactatctgctagctgcctgtcccctgaacacactgtaaaaaatatctcctcactatctgctagctgtctgtcccctgaacacactgtaaaaaatatctcctcactatctgctagctgcctgtcccctgaacacactgtaaaaaatatctcctcactatctgctagctgtctgtcccctgaacacactgtaaaaaacatctcctcactatctgctagctgcctgtcccctgaacacactgtaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16821 lncRNA upstream 35606 46748679 ~ 46749688 (+) True G12609
TU16819 lncRNA upstream 35606 46748686 ~ 46749688 (+) False G12609
TU16811 lncRNA upstream 62333 46703025 ~ 46722961 (+) True G12601
TU16801 lncRNA upstream 170015 46614923 ~ 46615279 (+) True G12592
TU16800 lncRNA upstream 170553 46614448 ~ 46614741 (+) False LOC120562979
TU16834 lncRNA downstream 56544 46842238 ~ 46842644 (+) True G12621
TU16839 lncRNA downstream 126598 46912292 ~ 46912716 (+) True G12626
TU16840 lncRNA downstream 152554 46938248 ~ 46938639 (+) True G12627
TU16841 lncRNA downstream 186697 46972391 ~ 46972679 (+) True G12628
TU16849 lncRNA downstream 317871 47103565 ~ 47103831 (+) True G12636
XM_039815239.1 mRNA upstream 383929 46392846 ~ 46401365 (+) True si:ch73-6k14.2
XM_039805647.1 mRNA upstream 411454 46346970 ~ 46373840 (+) True LOC120562127
XM_039798275.1 mRNA upstream 447961 46318376 ~ 46337333 (+) True LOC120557716
XM_039809380.1 mRNA upstream 683967 46080099 ~ 46101327 (+) True gstt1b
XM_039809414.1 mRNA upstream 706275 46068792 ~ 46079019 (+) True ddt
XM_039808768.1 mRNA downstream 60323 46846017 ~ 47125487 (+) True LOC120564084
XM_039808779.1 mRNA downstream 60323 46846017 ~ 47125487 (+) False LOC120564084
XM_039808795.1 mRNA downstream 60323 46846017 ~ 47120634 (+) False LOC120564084
XM_039776844.1 mRNA downstream 1415176 48200870 ~ 48202754 (+) True LOC120543662
XM_039776742.1 mRNA downstream 1428610 48214304 ~ 48296748 (+) False neurl1aa
TU16762 other upstream 367521 46416428 ~ 46417773 (+) True G12553
unassigned_transcript_72 other upstream 577569 46207653 ~ 46207725 (+) True trnak-uuu_1
unassigned_transcript_71 other upstream 578290 46206932 ~ 46207004 (+) True trnat-ugu
TU16690 other upstream 615605 46166405 ~ 46169689 (+) True G12491
unassigned_transcript_69 other upstream 620741 46164482 ~ 46164553 (+) True trnae-cuc
XR_005640059.1 other downstream 60323 46846017 ~ 47125487 (+) False LOC120564084
XR_005640058.1 other downstream 60323 46846017 ~ 47120976 (+) False LOC120564084
TU17111 other downstream 1643106 48428800 ~ 48487894 (+) True G12872
TU17110 other downstream 1643159 48428853 ~ 48488219 (+) False G12872
TU17112 other downstream 1699554 48485248 ~ 48486493 (+) False G12873

Expression Profile