RNA id: TU16838


Basic Information

Item Value
RNA id TU16838
length 996
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G12625
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 47126345 ~ 47127340 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTATGATTAAGGAAATTAAGGATTTCTTTTCAGGTTTTGCAAAGTAAGGATGTAAAGTCCTGAGTACTGATTTAgttcacatttcacatttagAAAAGGGGTTCTGGGCTTCTGGCTCTGATATTAACACCTTGAGGGAGACAAACCGTAGACGGTAACCCCAAACCCACCGTCAGAAACAACGTAGTACTAATCCTAACCTTTAagggtaactttgtttttttttcaacctggaccctatttccccaTGTTTTTTATCTAACTGACTAATGGGAGCCAGCATATTCCTTTACATGTAATGGTTGAATTaggcttttttccccccaaccaAACCAAAGTGGTgtttgttggaacagtggaaagacgaaccaagacggcttttgatagttttattttgtttcggtccactttgaatgaagtgtgttttacgatgaaaaaattactgattatttaaatggagtctggtgggtttggtaaTAGTGATTTCTGGGCTGTTTCTTTTTAAACTTACTCTTTAACGGAAAAGTCgacctctgtagggatcctttccataatgttgtcagacacttataataataataatctgagtctgtcagcggcaaaacaaccACTTTTTGTGGACGTAAATTGAAGGTGATCagttgccctattaacttacattgcagCTTTTTTTGCCACTGcagactgcagcgatctctcttaatactggaccaatgtcagagaTTGTTTCCATCATCGTCACTtttaccccttttccaccaaggCAGAGCTGGTGCTGGTTCGGAGTCAGAGCCTAGTTTCAAATCATTGCTGGGCCAGAAGTAAGAAGCGCTTACGTCAGGGGCTGGTGGCGGAGTTACCGTGACCAACAAGGCGAACAAAAACTTGTGACGGCCCTTTTTGAATTAGCAGATAAACACGATGGACGCGattaaacaacaacagcagtggtcagaggaggaaacaagCTGCTTTCTGGCACTGTAAAGGCGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16852 lncRNA upstream 4828 47121216 ~ 47121517 (+) True G12639
TU16849 lncRNA upstream 22514 47103565 ~ 47103831 (+) True G12636
TU16841 lncRNA upstream 153666 46972391 ~ 46972679 (+) True G12628
TU16840 lncRNA upstream 187706 46938248 ~ 46938639 (+) True G12627
TU16839 lncRNA upstream 213629 46912292 ~ 46912716 (+) True G12626
TU16889 lncRNA downstream 56879 47184219 ~ 47184548 (+) True G12673
TU16890 lncRNA downstream 69046 47196386 ~ 47196586 (+) True G12674
TU16892 lncRNA downstream 99627 47226967 ~ 47227207 (+) True G12676
TU16924 lncRNA downstream 404481 47531821 ~ 47532034 (+) True G12701
TU16926 lncRNA downstream 437848 47565188 ~ 47565503 (+) True G12703
XM_039808768.1 mRNA upstream 858 46846017 ~ 47125487 (+) True LOC120564084
XM_039808779.1 mRNA upstream 858 46846017 ~ 47125487 (+) False LOC120564084
XM_039808795.1 mRNA upstream 5711 46846017 ~ 47120634 (+) False LOC120564084
XM_039815239.1 mRNA upstream 724980 46392846 ~ 46401365 (+) True si:ch73-6k14.2
XM_039805647.1 mRNA upstream 752505 46346970 ~ 46373840 (+) True LOC120562127
XM_039776844.1 mRNA downstream 1073530 48200870 ~ 48202754 (+) True LOC120543662
XM_039776742.1 mRNA downstream 1086964 48214304 ~ 48296748 (+) False neurl1aa
XM_039776668.1 mRNA downstream 1086968 48214308 ~ 48320857 (+) True neurl1aa
XM_039810075.1 mRNA downstream 1370125 48497465 ~ 48609279 (+) True LOC120564817
XM_039796786.1 mRNA downstream 1483939 48611279 ~ 48704119 (+) False LOC120556912
XR_005640059.1 other upstream 858 46846017 ~ 47125487 (+) False LOC120564084
XR_005640058.1 other upstream 5369 46846017 ~ 47120976 (+) False LOC120564084
TU16762 other upstream 708572 46416428 ~ 46417773 (+) True G12553
unassigned_transcript_72 other upstream 918620 46207653 ~ 46207725 (+) True trnak-uuu_1
unassigned_transcript_71 other upstream 919341 46206932 ~ 46207004 (+) True trnat-ugu
TU17111 other downstream 1301460 48428800 ~ 48487894 (+) True G12872
TU17110 other downstream 1301513 48428853 ~ 48488219 (+) False G12872
TU17112 other downstream 1357908 48485248 ~ 48486493 (+) False G12873
TU17113 other downstream 1357908 48485248 ~ 48486493 (+) True G12873

Expression Profile