RNA id: TU16849



Basic Information


Item Value
RNA id TU16849
length 267
lncRNA type intronic
GC content 0.48
exon number 1
gene id G12636
representative True

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 47103565 ~ 47103831 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


cactatctgctagctgcctgtcccctgaacacactgtaaaaaacatctcctcactatctgctagctgcctgtccccgaacacactgtaaaaacatctcctcactatctgctagcgctctgtcccctgaacacactgtaaaaaacatctcttcactatctgctagctgcctgtcccctgaacacactgtaaaaaaccgcggtctctgtagacagcccaggctccacaaacggcaacgaAAACAAACTGCGGcaacctgccccacgaac

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU16841 lncRNA upstream 130886 46972391 ~ 46972679 (+) True G12628
TU16840 lncRNA upstream 164926 46938248 ~ 46938639 (+) True G12627
TU16839 lncRNA upstream 190849 46912292 ~ 46912716 (+) True G12626
TU16834 lncRNA upstream 260921 46842238 ~ 46842644 (+) True G12621
TU16828 lncRNA upstream 317871 46785294 ~ 46785694 (+) True G12615
TU16852 lncRNA downstream 17385 47121216 ~ 47121517 (+) True G12639
TU16838 lncRNA downstream 22514 47126345 ~ 47127340 (+) True G12625
TU16889 lncRNA downstream 80388 47184219 ~ 47184548 (+) True G12673
TU16890 lncRNA downstream 92555 47196386 ~ 47196586 (+) True G12674
TU16892 lncRNA downstream 123136 47226967 ~ 47227207 (+) True G12676
XM_039815239.1 mRNA upstream 702200 46392846 ~ 46401365 (+) True si:ch73-6k14.2
XM_039805647.1 mRNA upstream 729725 46346970 ~ 46373840 (+) True LOC120562127
XM_039798275.1 mRNA upstream 766232 46318376 ~ 46337333 (+) True LOC120557716
XM_039809380.1 mRNA upstream 1002238 46080099 ~ 46101327 (+) True gstt1b
XM_039809414.1 mRNA upstream 1024546 46068792 ~ 46079019 (+) True ddt
XM_039776844.1 mRNA downstream 1097039 48200870 ~ 48202754 (+) True LOC120543662
XM_039776742.1 mRNA downstream 1110473 48214304 ~ 48296748 (+) False neurl1aa
XM_039776668.1 mRNA downstream 1110477 48214308 ~ 48320857 (+) True neurl1aa
XM_039810075.1 mRNA downstream 1393634 48497465 ~ 48609279 (+) True LOC120564817
XM_039796786.1 mRNA downstream 1507448 48611279 ~ 48704119 (+) False LOC120556912
TU16762 other upstream 685792 46416428 ~ 46417773 (+) True G12553
unassigned_transcript_72 other upstream 895840 46207653 ~ 46207725 (+) True trnak-uuu_1
unassigned_transcript_71 other upstream 896561 46206932 ~ 46207004 (+) True trnat-ugu
TU16690 other upstream 933876 46166405 ~ 46169689 (+) True G12491
unassigned_transcript_69 other upstream 939012 46164482 ~ 46164553 (+) True trnae-cuc
TU17111 other downstream 1324969 48428800 ~ 48487894 (+) True G12872
TU17110 other downstream 1325022 48428853 ~ 48488219 (+) False G12872
TU17112 other downstream 1381417 48485248 ~ 48486493 (+) False G12873
TU17113 other downstream 1381417 48485248 ~ 48486493 (+) True G12873

Expression Profile


TU16849 Expression in all Baseline Samples

Bar chart with 13 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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TU16849 Expression in each Bioproject

Bar chart with 3 bars.
TU16849 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.