RNA id: TU16889


Basic Information

Item Value
RNA id TU16889
length 330
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G12673
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 47184219 ~ 47184548 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aacctcctcctgttgccttgatattctaccaacgggtgttttcaaaaatgtttcgaagtgtttggcttctgatcttctacagattgtaaacacatctctgctctcaggtatctttccacaggccctaaaaactgcagtcatcaagccactcctaaaaaagaacaatctagacacgacactaatgagcaactataggccaatatcaaaccttccatttttaagtaaaatcatagaaaaagtggtttttcaacaactcaaccttttcttattgctaaacaacagttttgatgccttccagtcaggttttcgaccacaccacagcactgagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16838 lncRNA upstream 56879 47126345 ~ 47127340 (+) True G12625
TU16852 lncRNA upstream 62702 47121216 ~ 47121517 (+) True G12639
TU16849 lncRNA upstream 80388 47103565 ~ 47103831 (+) True G12636
TU16841 lncRNA upstream 211540 46972391 ~ 46972679 (+) True G12628
TU16840 lncRNA upstream 245580 46938248 ~ 46938639 (+) True G12627
TU16890 lncRNA downstream 11838 47196386 ~ 47196586 (+) True G12674
TU16892 lncRNA downstream 42419 47226967 ~ 47227207 (+) True G12676
TU16924 lncRNA downstream 347273 47531821 ~ 47532034 (+) True G12701
TU16926 lncRNA downstream 380640 47565188 ~ 47565503 (+) True G12703
TU16931 lncRNA downstream 450723 47635271 ~ 47635617 (+) True G12708
XM_039808768.1 mRNA upstream 58732 46846017 ~ 47125487 (+) True LOC120564084
XM_039808779.1 mRNA upstream 58732 46846017 ~ 47125487 (+) False LOC120564084
XM_039808795.1 mRNA upstream 63585 46846017 ~ 47120634 (+) False LOC120564084
XM_039815239.1 mRNA upstream 782854 46392846 ~ 46401365 (+) True si:ch73-6k14.2
XM_039805647.1 mRNA upstream 810379 46346970 ~ 46373840 (+) True LOC120562127
XM_039776844.1 mRNA downstream 1016322 48200870 ~ 48202754 (+) True LOC120543662
XM_039776742.1 mRNA downstream 1029756 48214304 ~ 48296748 (+) False neurl1aa
XM_039776668.1 mRNA downstream 1029760 48214308 ~ 48320857 (+) True neurl1aa
XM_039810075.1 mRNA downstream 1312917 48497465 ~ 48609279 (+) True LOC120564817
XM_039796786.1 mRNA downstream 1426731 48611279 ~ 48704119 (+) False LOC120556912
XR_005640059.1 other upstream 58732 46846017 ~ 47125487 (+) False LOC120564084
XR_005640058.1 other upstream 63243 46846017 ~ 47120976 (+) False LOC120564084
TU16762 other upstream 766446 46416428 ~ 46417773 (+) True G12553
unassigned_transcript_72 other upstream 976494 46207653 ~ 46207725 (+) True trnak-uuu_1
unassigned_transcript_71 other upstream 977215 46206932 ~ 46207004 (+) True trnat-ugu
TU17111 other downstream 1244252 48428800 ~ 48487894 (+) True G12872
TU17110 other downstream 1244305 48428853 ~ 48488219 (+) False G12872
TU17112 other downstream 1300700 48485248 ~ 48486493 (+) False G12873
TU17113 other downstream 1300700 48485248 ~ 48486493 (+) True G12873

Expression Profile