RNA id: TU16926


Basic Information

Item Value
RNA id TU16926
length 316
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G12703
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 47565188 ~ 47565503 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccttcctctttctctgtgttggcgttctaacctccggtggatttgtgaggactatggttaactgctcctcagatctctgcagggtaaatccagacagctagctagactatctgtccaatctgagttttctgttgcacgactaaaactacttttgaatgtacacatgttccagcaaaacaagttccttcctgaggctattttgcagaggcaccgtggctccttctgcccaagacgattgtgattggtttaaagaaatgccaataaaacagagcaagtttttctcccatccaggaatgctgtgtggactagccagacc

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16924 lncRNA upstream 33154 47531821 ~ 47532034 (+) True G12701
TU16892 lncRNA upstream 337981 47226967 ~ 47227207 (+) True G12676
TU16890 lncRNA upstream 368602 47196386 ~ 47196586 (+) True G12674
TU16889 lncRNA upstream 380640 47184219 ~ 47184548 (+) True G12673
TU16838 lncRNA upstream 437848 47126345 ~ 47127340 (+) True G12625
TU16931 lncRNA downstream 69768 47635271 ~ 47635617 (+) True G12708
TU16932 lncRNA downstream 103782 47669285 ~ 47669679 (+) True G12709
XR_005636501.1 lncRNA downstream 161157 47726660 ~ 47728050 (+) True LOC120544411
TU16986 lncRNA downstream 187282 47752785 ~ 47753314 (+) True G12756
TU16987 lncRNA downstream 212793 47778296 ~ 47778651 (+) True G12757
XM_039808768.1 mRNA upstream 439701 46846017 ~ 47125487 (+) True LOC120564084
XM_039808779.1 mRNA upstream 439701 46846017 ~ 47125487 (+) False LOC120564084
XM_039808795.1 mRNA upstream 444554 46846017 ~ 47120634 (+) False LOC120564084
XM_039815239.1 mRNA upstream 1163823 46392846 ~ 46401365 (+) True si:ch73-6k14.2
XM_039805647.1 mRNA upstream 1191348 46346970 ~ 46373840 (+) True LOC120562127
XM_039776844.1 mRNA downstream 635367 48200870 ~ 48202754 (+) True LOC120543662
XM_039776742.1 mRNA downstream 648801 48214304 ~ 48296748 (+) False neurl1aa
XM_039776668.1 mRNA downstream 648805 48214308 ~ 48320857 (+) True neurl1aa
XM_039810075.1 mRNA downstream 931962 48497465 ~ 48609279 (+) True LOC120564817
XM_039796786.1 mRNA downstream 1045776 48611279 ~ 48704119 (+) False LOC120556912
XR_005640059.1 other upstream 439701 46846017 ~ 47125487 (+) False LOC120564084
XR_005640058.1 other upstream 444212 46846017 ~ 47120976 (+) False LOC120564084
TU16762 other upstream 1147415 46416428 ~ 46417773 (+) True G12553
unassigned_transcript_72 other upstream 1357463 46207653 ~ 46207725 (+) True trnak-uuu_1
unassigned_transcript_71 other upstream 1358184 46206932 ~ 46207004 (+) True trnat-ugu
TU17111 other downstream 863297 48428800 ~ 48487894 (+) True G12872
TU17110 other downstream 863350 48428853 ~ 48488219 (+) False G12872
TU17112 other downstream 919745 48485248 ~ 48486493 (+) False G12873
TU17113 other downstream 919745 48485248 ~ 48486493 (+) True G12873

Expression Profile