RNA id: TU17021


Basic Information

Item Value
RNA id TU17021
length 264
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G12791
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 48037221 ~ 48037484 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAATTTTGGAGGGAAAAACTCAGAAAATCGGTCCCGGGTAATACAAAAGTCCTGCATATGTGCCTTAATGCCGAGCAACGCAGCCCGATCATACTGTATGATTGCAGAGACATAACTGGTAGTTGATAGGGTTGACACAATGAAAATCACAAGGAAGATTACAAATGtatgagagagcagagaggtgaCCGACGCATAGCCAAACACAGGCGCCATCTTTAAAGTAGAATCTTGTGTGAGGTacctgtagtgacatgcctata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17014 lncRNA upstream 53337 47983551 ~ 47983884 (+) True G12784
TU17011 lncRNA upstream 60155 47976573 ~ 47977066 (+) True G12781
TU17008 lncRNA upstream 92859 47943938 ~ 47944362 (+) True G12778
TU17007 lncRNA upstream 114802 47922167 ~ 47922419 (+) True G12777
TU16997 lncRNA upstream 177194 47859361 ~ 47860027 (+) True G12767
TU17031 lncRNA downstream 28638 48066122 ~ 48066354 (+) True G12801
TU17032 lncRNA downstream 35791 48073275 ~ 48074049 (+) True G12802
TU17034 lncRNA downstream 42342 48079826 ~ 48080062 (+) True G12804
TU17035 lncRNA downstream 55287 48092771 ~ 48093031 (+) True G12805
TU17036 lncRNA downstream 63999 48101483 ~ 48101964 (+) True LOC120544319
XM_039808768.1 mRNA upstream 911734 46846017 ~ 47125487 (+) True LOC120564084
XM_039808779.1 mRNA upstream 911734 46846017 ~ 47125487 (+) False LOC120564084
XM_039808795.1 mRNA upstream 916587 46846017 ~ 47120634 (+) False LOC120564084
XM_039815239.1 mRNA upstream 1635856 46392846 ~ 46401365 (+) True si:ch73-6k14.2
XM_039805647.1 mRNA upstream 1663381 46346970 ~ 46373840 (+) True LOC120562127
XM_039776844.1 mRNA downstream 163386 48200870 ~ 48202754 (+) True LOC120543662
XM_039776742.1 mRNA downstream 176820 48214304 ~ 48296748 (+) False neurl1aa
XM_039776668.1 mRNA downstream 176824 48214308 ~ 48320857 (+) True neurl1aa
XM_039810075.1 mRNA downstream 459981 48497465 ~ 48609279 (+) True LOC120564817
XM_039796786.1 mRNA downstream 573795 48611279 ~ 48704119 (+) False LOC120556912
XR_005640059.1 other upstream 911734 46846017 ~ 47125487 (+) False LOC120564084
XR_005640058.1 other upstream 916245 46846017 ~ 47120976 (+) False LOC120564084
TU16762 other upstream 1619448 46416428 ~ 46417773 (+) True G12553
unassigned_transcript_72 other upstream 1829496 46207653 ~ 46207725 (+) True trnak-uuu_1
unassigned_transcript_71 other upstream 1830217 46206932 ~ 46207004 (+) True trnat-ugu
TU17111 other downstream 391316 48428800 ~ 48487894 (+) True G12872
TU17110 other downstream 391369 48428853 ~ 48488219 (+) False G12872
TU17112 other downstream 447764 48485248 ~ 48486493 (+) False G12873
TU17113 other downstream 447764 48485248 ~ 48486493 (+) True G12873

Expression Profile